RNA id: TCONS_00000266


Basic Information

Item Value
RNA id TCONS_00000266
length 1176
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_000150
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11736420 ~ 11737595 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGAGGCAGCTGCAGTTTTTCCTTCTGTTGGGAACATTGTTTATCATATTCTTCATTATAATTCACTGGGATGATGTGAAAGATGGGACTTTTTATCTGCACGCAGCTTTATCAACACCTGCGCTCCCAGCAAGTGTTGTGTTCTCTGAACGTTGGACAAGCGAGGATTTGTTTATCTGGAAAGAGTCGAGCAGGTCAGTCAAACCAAACCTGACAATCATCTCAGCTCATCCAAACAATCTAACGCACATGTTCATGCAGTCTTCCTCCAAAAACCTCAAACTTCGTCAAGCACGTCGCAAACGTATAATAAAAGAACTTTGTCAAGCCAACAGCAGTTTGATTTTCCCTGGAAAATTTAGGACATTTGACCAAATTCCAAGCAAAGAGCTGGACCATCTCATTGTGGACGATCGTCACGGTGTGATTTACTGTTTTGTACCCAAGGTAGCTTGTACCAACTGGAAACGAATCATGATTGTGCTCAGCCAGAAGCTGAAGGCACCTGATGGAGCTCCATATCTGGATCCCCTTGACATACCTTCAGCTTTATCCCATAATGCTACTGTGCATTTGACATTTAACAAGTTTTGGAGGCTTTTTGGTCATTTTTCACGTCCTCTGATGCATCACAAGCTGAAGAACTACACTAAGTTCCTCTTTGTACGGGATCCTTTTGTACGACTGATTTCTGCTTTCCGGAACAAGTTTGCTCTGCCAAATGAGGATTTCTACAAACAGTTCGGCTCCACAATGCTTCAGCGTTATGCTAATATTTCTCAGCCCCCCACTTCGGCTCAAGAGGCCTTCAGTGCAGGCATCAGACTGTCCTTTACTCACTTCATTAAGTATCTGTTAGATCCACAGACTGAGAAGGAGAAGCCGTTCAATGAGCATTGGCAGCAGATGCACAGACTTTGCCATCCATGCCAAATTGACTATGACTTTGTTGGGAAACTAGAAACTCTTCATGAGGACACAGAACATTTGCTGAAGATTCTTGGACTCAGTAATCAGATTCGTTTCCCCCCAGGGTACCGTAATAGGACGGCTGTAAAATGGGAGCGGGAATGGTTTGCAAACGTTTCAGTAGCAGACAGGAGAAAACTTTACAGTCTCTATGAAGCAGATTTCAGATTGTTTGGATACAACAAACCTGAAACGCTTTTCTAA

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-144 Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and pectoral fin. Orthologous to human CHST12 (carbohydrate sulfotransferase 12).

Ensembl:

ensembl_id ENSDART00000140329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002813 lncRNA upstream 949103 10780928 ~ 10787317 (+) True XLOC_000143
TCONS_00003036 lncRNA upstream 1055579 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00003035 lncRNA upstream 1068392 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00000251 lncRNA upstream 1072895 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00002812 lncRNA upstream 1118490 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00002814 lncRNA downstream 195722 11933317 ~ 11933676 (+) True XLOC_000152
TCONS_00003037 lncRNA downstream 308897 12046492 ~ 12048509 (+) False XLOC_000155
TCONS_00000280 lncRNA downstream 434727 12172322 ~ 12181039 (+) False XLOC_000159
TCONS_00000284 lncRNA downstream 446902 12184497 ~ 12187708 (+) False XLOC_000159
TCONS_00000285 lncRNA downstream 448555 12186150 ~ 12187708 (+) True XLOC_000159
TCONS_00000264 mRNA upstream 3290 11711226 ~ 11733130 (+) False XLOC_000149
TCONS_00000265 mRNA upstream 17399 11711503 ~ 11719021 (+) True XLOC_000149
TCONS_00000261 mRNA upstream 28755 11690360 ~ 11707665 (+) False XLOC_000148
TCONS_00000262 mRNA upstream 28755 11691722 ~ 11707665 (+) False XLOC_000148
TCONS_00000260 mRNA upstream 67638 11659861 ~ 11668782 (+) True XLOC_000147
TCONS_00000267 mRNA downstream 143964 11881559 ~ 11900420 (+) False XLOC_000151
TCONS_00000268 mRNA downstream 144591 11882186 ~ 11892019 (+) True XLOC_000151
TCONS_00000269 mRNA downstream 239831 11977426 ~ 11994710 (+) True XLOC_000153
TCONS_00000270 mRNA downstream 272078 12009673 ~ 12044390 (+) False XLOC_000154
TCONS_00000273 mRNA downstream 308949 12046544 ~ 12048509 (+) False XLOC_000155
TCONS_00000263 other upstream 41252 11691748 ~ 11695168 (+) True XLOC_000148
TCONS_00000259 other upstream 266770 11469536 ~ 11469650 (+) True XLOC_000146
TCONS_00000258 other upstream 355809 11380497 ~ 11380611 (+) True XLOC_000145
TCONS_00000253 other upstream 1040092 10683995 ~ 10696328 (+) True XLOC_000140
TCONS_00000247 other upstream 1372569 10363720 ~ 10363851 (+) True XLOC_000133
TCONS_00000271 other downstream 277521 12015116 ~ 12033278 (+) False XLOC_000154
TCONS_00000272 other downstream 277561 12015156 ~ 12031300 (+) True XLOC_000154
TCONS_00000274 other downstream 308996 12046591 ~ 12047368 (+) True XLOC_000155
TCONS_00000278 other downstream 334326 12071921 ~ 12077478 (+) True XLOC_000157
TCONS_00000299 other downstream 610763 12348358 ~ 12357076 (+) True XLOC_000164

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_02391089_02392297.mRNA True 1827 mRNA 0.42 1 CI01000300 2390518 ~ 2392344 (+)