Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000268 |
| length | 1060 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 3 |
| gene id | XLOC_000151 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 11881559 ~ 11900420 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042147 | retrograde transport, endosome to Golgi | biological_process |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090313-317 | Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport and retrograde transport, endosome to Golgi. Predicted to be located in membrane. Orthologous to human SNX8 (sorting nexin 8). |
| ensembl_id | ENSDART00000193419 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002813 | lncRNA | upstream | 1094869 | 10780928 ~ 10787317 (+) | True | XLOC_000143 |
| TCONS_00003036 | lncRNA | upstream | 1201345 | 10645364 ~ 10680841 (+) | True | XLOC_000138 |
| TCONS_00003035 | lncRNA | upstream | 1214158 | 10645264 ~ 10668028 (+) | True | XLOC_000137 |
| TCONS_00000251 | lncRNA | upstream | 1218661 | 10662312 ~ 10663525 (+) | True | XLOC_000139 |
| TCONS_00002812 | lncRNA | upstream | 1264256 | 10617524 ~ 10617930 (+) | True | XLOC_000136 |
| TCONS_00002814 | lncRNA | downstream | 41298 | 11933317 ~ 11933676 (+) | True | XLOC_000152 |
| TCONS_00003037 | lncRNA | downstream | 154473 | 12046492 ~ 12048509 (+) | False | XLOC_000155 |
| TCONS_00000280 | lncRNA | downstream | 280303 | 12172322 ~ 12181039 (+) | False | XLOC_000159 |
| TCONS_00000284 | lncRNA | downstream | 292478 | 12184497 ~ 12187708 (+) | False | XLOC_000159 |
| TCONS_00000285 | lncRNA | downstream | 294131 | 12186150 ~ 12187708 (+) | True | XLOC_000159 |
| TCONS_00000266 | mRNA | upstream | 144591 | 11736420 ~ 11737595 (+) | True | XLOC_000150 |
| TCONS_00000264 | mRNA | upstream | 149056 | 11711226 ~ 11733130 (+) | False | XLOC_000149 |
| TCONS_00000265 | mRNA | upstream | 163165 | 11711503 ~ 11719021 (+) | True | XLOC_000149 |
| TCONS_00000261 | mRNA | upstream | 174521 | 11690360 ~ 11707665 (+) | False | XLOC_000148 |
| TCONS_00000269 | mRNA | downstream | 85407 | 11977426 ~ 11994710 (+) | True | XLOC_000153 |
| TCONS_00000270 | mRNA | downstream | 117654 | 12009673 ~ 12044390 (+) | False | XLOC_000154 |
| TCONS_00000273 | mRNA | downstream | 154525 | 12046544 ~ 12048509 (+) | False | XLOC_000155 |
| TCONS_00000275 | mRNA | downstream | 157210 | 12049229 ~ 12058439 (+) | False | XLOC_000156 |
| TCONS_00000276 | mRNA | downstream | 157212 | 12049231 ~ 12058134 (+) | True | XLOC_000156 |
| TCONS_00000263 | other | upstream | 187018 | 11691748 ~ 11695168 (+) | True | XLOC_000148 |
| TCONS_00000259 | other | upstream | 412536 | 11469536 ~ 11469650 (+) | True | XLOC_000146 |
| TCONS_00000258 | other | upstream | 501575 | 11380497 ~ 11380611 (+) | True | XLOC_000145 |
| TCONS_00000253 | other | upstream | 1185858 | 10683995 ~ 10696328 (+) | True | XLOC_000140 |
| TCONS_00000247 | other | upstream | 1518335 | 10363720 ~ 10363851 (+) | True | XLOC_000133 |
| TCONS_00000271 | other | downstream | 123097 | 12015116 ~ 12033278 (+) | False | XLOC_000154 |
| TCONS_00000272 | other | downstream | 123137 | 12015156 ~ 12031300 (+) | True | XLOC_000154 |
| TCONS_00000274 | other | downstream | 154572 | 12046591 ~ 12047368 (+) | True | XLOC_000155 |
| TCONS_00000278 | other | downstream | 179902 | 12071921 ~ 12077478 (+) | True | XLOC_000157 |
| TCONS_00000299 | other | downstream | 456339 | 12348358 ~ 12357076 (+) | True | XLOC_000164 |
