RNA id: TU2678271


Basic Information

Item Value
RNA id TU2678271
length 240
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2339330
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 56851 ~ 57090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcaataccttattatgatttatttaatcagggggtgagccctgcatcaataccttattatgatttatttaatcaggggatgagccctgcatcaataccttattatgatttatttaacctttatttaatcaggggatgagccctgcatcactaccttattatgatttatttaacctttatttaatcaggggatgagccctgcatcaataccttattatgatttatttaatcaggggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678268 lncRNA upstream 8408 48224 ~ 48443 (+) True G2339327
TU2678264 lncRNA upstream 16157 40477 ~ 40694 (+) True G2339323
TU2678261 lncRNA upstream 30496 25589 ~ 26355 (+) True G2339320
TU2678257 lncRNA upstream 36910 19335 ~ 19941 (+) True G2339319
TU2678256 lncRNA upstream 37673 18949 ~ 19178 (+) True G2339318
TU2678276 lncRNA downstream 21099 78189 ~ 78507 (+) True G2339334
TU2678281 lncRNA downstream 27975 85065 ~ 85395 (+) True G2339339
TU2678286 lncRNA downstream 41430 98520 ~ 99492 (+) True G2339344
TU2678295 lncRNA downstream 54988 112078 ~ 115154 (+) True G2339352
TU2678301 lncRNA downstream 63479 120569 ~ 121320 (+) True G2339356
XM_036972373.1 mRNA downstream 49979 107069 ~ 305241 (+) False LOC118947131
XM_036972374.1 mRNA downstream 49979 107069 ~ 305241 (+) True LOC118947131
XR_005041782.1 mRNA downstream 538413 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 705489 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 754397 811487 ~ 817121 (+) False si:ch73-41e3.7
TU2678285 other downstream 40025 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 406108 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 626254 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 814017 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 814017 871107 ~ 873839 (+) False G2339912

Expression Profile