RNA id: XM_036972373.1


Basic Information

Item Value
RNA id XM_036972373.1
length 1803
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC118947131
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 107069 ~ 305241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAGACACAATGCTGAGCTTCTGTATGCAAAGTCAACGTTCCATCTCTTCACCTCTGAATcgttcctcctctttctctcccctctcccttcttacAGAGTTCTTCCTGGAGCTCCTCGACAACAGTGAGAAATCCCTGAATAACATGTTCACGCGGACCTACGGGAAGCTGTACATGCAGAACAGTGAGCTGTTCCAGGACCTGTTCACGGAGCTGAAGCGTTACTACACTGGGGGGAACGTCAACCTGGAGGAGATGCTGAATGACTTCTGGTCCCGTCTGCTAGAGAGGATGTTTCAGCTGCTGAACTCTCAGTACCACTTCACCGACGACTACTTGGAGTGCGTCAGTAAATACACTGACCAGCTGAAGCCTTTCGGTGACGTACCCCGGAAACTAAAGGCCCAGGTTACGAGGGCCTTCATCGCTGCAAGGACCTTCGTCCAGGGCCTCATGGTGGGCAGGGAGGTGGCTAACAGGGTGGCTAAGGTGAATGTGGCCCCCGCCTGCATCAGGGCCCTGACTAAGATGCTGTACTGTCCGTACTGCAGGGGTCTGCCTGGGCTGAAGCCCTGTCATAACTACTGCCATAATGTGATGAGAGGCTGTCTGGCTAACCAGGCTGACCTAGATCCCGAGTGGAACCTCTTCATAGATGCCATGTTGCTGGTAGCTGACCGGCTGGAGGGACCCTTCAACATCGAAGCCATCATGGAACCCATAGATGTGAAGATCTCTGAAGCCATCATGACCATGCAAGACAACAGCatgacagtttcagctaagGTGTTCCAGGGGTGTGGTCAGCCCAAGCCGTCTGGGATGGGCAGCAGCAGATCAGCCAGGGGGATCTCTGATGTCTTCAACGCCCGATTCAGACCCTACAGCCCAGAGGAGAGACCCACCACTGCCGCTGGCACCAGCCTGGACAGACTGaggacagtgtggaggaCAATGCAACACAGCGTGCTAGACATTAAGAAGAAGCTGAAGCAGTCCAAAAAGTTCTGGTCCAACCTGCCAGATGAGATCTGTATTAAAGACAAGTTGACCGAGTCAGATGAAGAGCAGTGTTGGAACAGTCACGCCAAGGCCAGGTATTTTCCTGAGGTGGTAAAGGACGGCCTCACCAACCAGCTGAACAACCCAGAGGTGGCGGTGGACATCACTAGACCGGACACTCTGATTCGCCAACAGATCATGACACTCAGAGTGATGACCAACAAGCTGAGAAACGCCTACAACGGCAACGACATCTTCTTTCAGGACTCCAgtgACGAGGGCAGTGGCAGCAGCAGTGGCTGTACAGAGGGATGTACCACAGAGTTTGTGTTTGTGGGTCCAGAGGCCCCCGTGGTGGGAGCAGACAGGAGTGATGAGCGAGCTTCGGCTGCAGCAGGCAGCGCCCCACATCCCTCCAGACCCTCTCTACCCCTGCTactgaccctctctctcacagCCCTGTCCTGGTCCAGGAGACAATACCAGCTGGCCCGAGAGGACACCAGGACATTACTGCTACTCTGACTCTGGCACCaatcagacagccagccagcaggTCGTCATACTAACTGTTAGTGTTCTCTAAACGGAACCAGAACAGGACAACCCTTTTGGATCCCCACCATGAAGAGATATGGtgacagtagtatactgtagtagacTGAGGAGTGTTGTGAGTGCTGCATCCTGCTTTGTCCCCAAAGATCTCTCTGTTCTAAGATGTTCTGTTCTaatctgctctgttctgctctgttctattctgctctgttctattctgctctgttctattctaatctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678286 lncRNA upstream 7577 98520 ~ 99492 (+) True G2339344
TU2678281 lncRNA upstream 21674 85065 ~ 85395 (+) True G2339339
TU2678276 lncRNA upstream 28562 78189 ~ 78507 (+) True G2339334
TU2678271 lncRNA upstream 49979 56851 ~ 57090 (+) True G2339330
TU2678268 lncRNA upstream 58626 48224 ~ 48443 (+) True G2339327
TU2678290 lncRNA downstream 3211 308452 ~ 308783 (+) True G2339348
TU2678422 lncRNA downstream 4223 309464 ~ 309943 (+) True G2339431
TU2678425 lncRNA downstream 19098 324339 ~ 325971 (+) True G2339434
TU2678466 lncRNA downstream 119351 424592 ~ 424824 (+) True G2339465
TU2678467 lncRNA downstream 121009 426250 ~ 426645 (+) True G2339466
XR_005041782.1 mRNA downstream 290262 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 457338 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 506246 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 506246 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 506246 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 9213 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 157957 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 378103 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 565866 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 565866 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 565866 871107 ~ 873839 (+) False G2339912

Expression Profile