RNA id: TU2678422


Basic Information

Item Value
RNA id TU2678422
length 280
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G2339431
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 309464 ~ 309943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgtTATATATTGAAACCAATCAAATATGATTCTTTAGAGGTTCCTACACAAGTAcatattgtatttttattgtcAAGTTATTTCTATTTAAACATGCAGCATAACGAGATGTATCTTATGTCTTCGCTCAAACCACTCACTCGCGATATTCTGCCTCCTGAAATAATGTCCCTCCCCCAGTTCATACATCATACCAACTTCTGCCTCCTGAAATAATGTCCCTCCCCCAGTTCATACATCATACCAACTTCTGCCTCCTGAAATAATGTCCCTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678290 lncRNA upstream 681 308452 ~ 308783 (+) True G2339348
TU2678418 lncRNA upstream 19353 289762 ~ 290111 (+) True G2339427
TU2678411 lncRNA upstream 25925 282752 ~ 283539 (+) True G2339424
TU2678372 lncRNA upstream 105197 203311 ~ 204267 (+) False G2339395
TU2678373 lncRNA upstream 105564 202965 ~ 203900 (+) False G2339395
TU2678425 lncRNA downstream 14396 324339 ~ 325971 (+) True G2339434
TU2678466 lncRNA downstream 114649 424592 ~ 424824 (+) True G2339465
TU2678467 lncRNA downstream 116307 426250 ~ 426645 (+) True G2339466
TU2678468 lncRNA downstream 122589 432532 ~ 432815 (+) True G2339467
TU2678469 lncRNA downstream 122989 432932 ~ 433134 (+) True G2339468
XM_036972373.1 mRNA upstream 4223 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 285560 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 452636 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 501544 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 501544 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 501544 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 211608 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 153255 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 373401 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 561164 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 561164 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 561164 871107 ~ 873839 (+) False G2339912

Expression Profile