RNA id: TU2678466


Basic Information

Item Value
RNA id TU2678466
length 233
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2339465
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 424592 ~ 424824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTAGGGTAAGAGTCTGGTTTAGGGTAAGCGTCAGGTTTAGGGTAAGAGTCAGGTTTAGGGTAAGAGTCAGGTTTAGGGTAAGAGTCAGGTTTAGGGTAAGAGTCAGGTTTAGGGTAAAGGgttagtgtgtggtgtgtgtgtggtgtgtgtgtgaatgtggtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgaatgtggtttgtggtgtgtgtgtgtgtgtggtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678425 lncRNA upstream 98621 324339 ~ 325971 (+) True G2339434
TU2678422 lncRNA upstream 114649 309464 ~ 309943 (+) True G2339431
TU2678290 lncRNA upstream 115809 308452 ~ 308783 (+) True G2339348
TU2678418 lncRNA upstream 134481 289762 ~ 290111 (+) True G2339427
TU2678411 lncRNA upstream 141053 282752 ~ 283539 (+) True G2339424
TU2678467 lncRNA downstream 1426 426250 ~ 426645 (+) True G2339466
TU2678468 lncRNA downstream 7708 432532 ~ 432815 (+) True G2339467
TU2678469 lncRNA downstream 8108 432932 ~ 433134 (+) True G2339468
TU2678470 lncRNA downstream 9623 434447 ~ 437244 (+) True G2339469
TU2678473 lncRNA downstream 13552 438376 ~ 438933 (+) True G2339472
XM_036972373.1 mRNA upstream 119351 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 170679 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 337755 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 386663 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 386663 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 386663 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 326736 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 38374 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 258520 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 446283 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 446283 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 446283 871107 ~ 873839 (+) False G2339912

Expression Profile