RNA id: TU2678411


Basic Information

Item Value
RNA id TU2678411
length 242
lncRNA type intronic
GC content 0.33
exon number 2
gene id G2339424
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 282752 ~ 283539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgaatacttatgtcaataaggtacttctgtgttttgtttttgctttgtcattatggagtattgtgatgtcattatggagtattgtgatgtcattatggagtattgtgatgtcattatggagtattgtgatgtcattatggagtattgtgatgtcattatggagtattgtgatgtcattatggagtattgtgtgtaaattgatgagaataaggctgtaacgtaacaacatgtgggaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678372 lncRNA upstream 78485 203311 ~ 204267 (+) False G2339395
TU2678373 lncRNA upstream 78852 202965 ~ 203900 (+) False G2339395
TU2678374 lncRNA upstream 79130 203311 ~ 203622 (+) True G2339395
TU2678348 lncRNA upstream 108930 169039 ~ 173822 (+) True G2339376
TU2678342 lncRNA upstream 120994 160850 ~ 161758 (+) False G2339371
TU2678418 lncRNA downstream 6223 289762 ~ 290111 (+) True G2339427
TU2678290 lncRNA downstream 24913 308452 ~ 308783 (+) True G2339348
TU2678422 lncRNA downstream 25925 309464 ~ 309943 (+) True G2339431
TU2678425 lncRNA downstream 40800 324339 ~ 325971 (+) True G2339434
TU2678466 lncRNA downstream 141053 424592 ~ 424824 (+) True G2339465
XR_005041782.1 mRNA downstream 311964 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 479040 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 527948 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 527948 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 527948 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 184896 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 179659 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 399805 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 587568 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 587568 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 587568 871107 ~ 873839 (+) False G2339912

Expression Profile