RNA id: TU2678476


Basic Information

Item Value
RNA id TU2678476
length 233
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2339475
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 448264 ~ 448496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACAGCTAGCTAATAGAGCAGGGGTGCCAGACTGATACAGCTAGCTAATAGAGCAGGGGTGCCAGACTGATACAGCTAGCTAATAAAGCAGGGGTGCCAGACTTATACAGCTAGCTAATAGAGCAGGGATGCCAGACTGATACAGCTAGCTAATAGAGCAGGGGTGCCAGACTGATACAGCTAGCTAATAGAGCAGGGATACCAGACTCTGATACAGCTAGCTAATAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678475 lncRNA upstream 3619 444306 ~ 444645 (+) True G2339474
TU2678474 lncRNA upstream 5185 442811 ~ 443079 (+) True G2339473
TU2678473 lncRNA upstream 9331 438376 ~ 438933 (+) True G2339472
TU2678470 lncRNA upstream 11020 434447 ~ 437244 (+) True G2339469
TU2678469 lncRNA upstream 15130 432932 ~ 433134 (+) True G2339468
TU2678483 lncRNA downstream 16040 464536 ~ 464753 (+) True G2339481
TU2678484 lncRNA downstream 19990 468486 ~ 468784 (+) True G2339482
TU2678491 lncRNA downstream 36957 485453 ~ 485746 (+) True G2339488
TU2678492 lncRNA downstream 37295 485791 ~ 486026 (+) True G2339489
TU2678519 lncRNA downstream 97844 546340 ~ 546933 (+) True G2339512
XM_036972373.1 mRNA upstream 143023 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 147007 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 314083 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 362991 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 362991 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 362991 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 350408 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 14702 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 234848 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 422611 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 422611 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 422611 871107 ~ 873839 (+) False G2339912

Expression Profile