RNA id: TU2678492


Basic Information

Item Value
RNA id TU2678492
length 236
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2339489
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 485791 ~ 486026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATGAAAGATATACAGTGAACTatgacagacagatatacagtgaACCATGACAGATATACAGTGAACCATGACAGATATACAGTGAACCATGACAGATATACAGTGGACCATGACAGACTGATATACAGTGGACCATGACAGATATACAGTGGACCATGACAGATATACAGTGGACCATGACAGATATAAAGTGAACCATGACAGATATACAGTGAACCATGACAGATATACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678491 lncRNA upstream 45 485453 ~ 485746 (+) True G2339488
TU2678484 lncRNA upstream 17007 468486 ~ 468784 (+) True G2339482
TU2678483 lncRNA upstream 21038 464536 ~ 464753 (+) True G2339481
TU2678476 lncRNA upstream 37295 448264 ~ 448496 (+) True G2339475
TU2678475 lncRNA upstream 41146 444306 ~ 444645 (+) True G2339474
TU2678519 lncRNA downstream 60314 546340 ~ 546933 (+) True G2339512
TU2678524 lncRNA downstream 66787 552813 ~ 553205 (+) False G2339517
TU2678525 lncRNA downstream 66787 552813 ~ 553443 (+) True G2339517
TU2678526 lncRNA downstream 68210 554236 ~ 554911 (+) True G2339518
TU2678531 lncRNA downstream 86681 572707 ~ 588552 (+) False G2339522
XM_036972373.1 mRNA upstream 180550 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 109477 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 276553 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 325461 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 325461 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 325461 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678479 other upstream 21324 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 387935 97115 ~ 97856 (+) True G2339343
TU2678903 other downstream 197318 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 385081 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 385081 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 385081 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 385081 871107 ~ 873839 (+) False G2339912

Expression Profile