RNA id: TU2678552


Basic Information

Item Value
RNA id TU2678552
length 407
lncRNA type intronic
GC content 0.44
exon number 3
gene id G2339532
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 608336 ~ 610581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtagtctatgTTGAAGGGAGCCAGTCTAGTGTACACTActcactgtagtctactgttgaaGTGAGCCAGTCTAGTGTACACTACTCACTCTAGTCTGTTGAAGAGAGCCAGTCTAGTGTACACTACTCACTGTAGTCTATGTTGAAGTGAGCCAGTCTAGTGTACACTACTCACTGTAGTCTATGTTGAAGTGAGCCAGTCTAGTGTACACTActcactgtagtctactgttgaaGTGAGCCAGTCTAGTGTACACTACTCACTGTAGTCTATGTTGAAGTGAGCCAGTCTAGTGTACACTACTCACTGTAGTCTATGTTGAAGTGAGCCAGTCTAGTGTACACTACTCACTGTAGTCTACTGTTGAAGTGAGCCAGTCTAGTGTACACTATTCACTGAAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678531 lncRNA upstream 19784 572707 ~ 588552 (+) False G2339522
TU2678532 lncRNA upstream 23202 572707 ~ 585134 (+) True G2339522
TU2678526 lncRNA upstream 53425 554236 ~ 554911 (+) True G2339518
TU2678525 lncRNA upstream 54893 552813 ~ 553443 (+) True G2339517
TU2678524 lncRNA upstream 55131 552813 ~ 553205 (+) False G2339517
TU2678574 lncRNA downstream 46480 655481 ~ 657445 (+) True G2339547
TU2678578 lncRNA downstream 48801 657802 ~ 658162 (+) True G2339548
TU2678586 lncRNA downstream 66835 675836 ~ 676782 (+) True G2339554
TU2678896 lncRNA downstream 71079 680080 ~ 680537 (+) True G2339791
TU2678901 lncRNA downstream 71953 680954 ~ 682170 (+) True G2339793
XR_005041782.1 mRNA upstream 11999 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 303095 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 153578 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 202486 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 202486 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 202486 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 203538 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678479 other upstream 143869 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 510480 97115 ~ 97856 (+) True G2339343
TU2678903 other downstream 74343 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 262106 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 262106 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 262106 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 262106 871107 ~ 873839 (+) False G2339912

Expression Profile