RNA id: TU2678578


Basic Information

Item Value
RNA id TU2678578
length 219
lncRNA type intronic
GC content 0.47
exon number 2
gene id G2339548
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 657802 ~ 658162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaccagcccacctatgagtagctcaCAATACTATTCTGAAAGGTTACACCATACACCAGGGGTCTCCagcaggctagggttaggggttaaggttagggttagggttaagggttagggttagctaccaGCTGGTTAAAAAGACAAACCTAACACAACATCATCCCACCCCTGGTCAGCCACTATTGGTTAAAAAGACAAACCTAACACAACATCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678574 lncRNA upstream 357 655481 ~ 657445 (+) True G2339547
TU2678557 lncRNA upstream 47221 608336 ~ 610581 (+) True G2339532
TU2678552 lncRNA upstream 48801 608336 ~ 609001 (+) False G2339532
TU2678531 lncRNA upstream 69250 572707 ~ 588552 (+) False G2339522
TU2678532 lncRNA upstream 72668 572707 ~ 585134 (+) True G2339522
TU2678586 lncRNA downstream 17674 675836 ~ 676782 (+) True G2339554
TU2678896 lncRNA downstream 21918 680080 ~ 680537 (+) True G2339791
TU2678901 lncRNA downstream 22792 680954 ~ 682170 (+) True G2339793
TU2678909 lncRNA downstream 35680 693842 ~ 694184 (+) True G2339801
TU2678928 lncRNA downstream 45774 703936 ~ 704424 (+) True G2339815
XR_005041782.1 mRNA upstream 61465 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 352561 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 104417 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 153325 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 153325 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 153325 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 154377 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678479 other upstream 193335 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 559946 97115 ~ 97856 (+) True G2339343
TU2678903 other downstream 25182 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 212945 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 212945 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 212945 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 212945 871107 ~ 873839 (+) False G2339912

Expression Profile