RNA id: TCONS_00062522


Basic Information

Item Value
RNA id TCONS_00062522
length 3119
RNA type mRNA
GC content 0.46
exon number 18
gene id XLOC_031936
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15762647 ~ 15893049 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTAAACCAGCGGCTTGCTGCTGCCTAGCTGGTGCGAGACTTGTCCAACTCTAGTTATAAATGCTTAACTTATGACAGCTAATCAGGACTTTCTGCTTGGATGCCTTACTACGCTTCGTTTAACCATTTTAGTTTCGAACGCTGTGACTTGCTGTTATGTTTTCCCTTTGATATTCAAATACAGCACTTTCTAAACTCTGAGGTGCGTAAAATCACTAAGGATGTCGCAGAGTTCATATGGCCGAATGTTGGATGCTGCTCAGGGAGCTTTGGAAGACCTTTTGGAGGATGAATATCCCACATTGGAGCTCCGTCCTCAAAAGGACCGCCTGCAGGTGTTTCAAACACTGGCCACTTTCTTCCTACGCTACATGAAGATTTTCCGTGCCCTGGAGGAGGTTTACGATCAGATTGTTCACCCCCAGAAGAGACGTGTCGTGCACCAGGTTCTTGACGGAGTGATGGGACGATTGGTAGAGCTGAAGAATGAGATGGTGGAGCTGGAGCACTCTGAATTTCACTACTTTGATGACCTATTGCAAGACTTTAAAATGACACCTGAGGATCTTGAGGTGCCTATTCCACGTTATTTTGTGAGAGAAAAGATGAGGGCGTTGAAGGAGAGGGAGAAGATGCTGGCCCATGTTTTGGCTAAAGAAGGACGTCCAGAACACAAATCTGTGAATAGGCCTGTTCTGTCCATGTCCATGGAGAGGGCTGTGTGGCTGCTACAGGTCAGTGAGCGAGCACGGCAGGGAAGACTGAGAGCTCACTTCATGAAGACAATTCGGCTAGAGGAACAAAGAAGACATCTGGGTTCTAGCATGCTGGACCCTGACCAAGCAGCCACCTGCATTCAAAAGGTTTGGCGGGGGTATCGAGACAGGAGAAGGGTCAACAAGGAGTGCCTAGAGGAGATGATATTTTTGGGAATGATTCCAGCCCAGCAGCAGACACCCAGCCCTGCCCAACTTCGTGCCCAGCAGGTGGAACGCAGGAGACACATCATTCAGGAGGAGCATGAGGCTGAGTACCAGACAGCACTGGTCAACATCAAAGAGTCAGTGCGGGCTGTGGATGGGGCAGATATTAAAGAAAGCCTGCAAGAACAAATACGCCAGTGGTTTCTTGAGTGTCGAGATGCCTCAGGGAAATTTCCTGACTTTCCAAGTCCCGAGGATGGAGGTTCTGCATCTATTTTTGCTCAGAAGACCCCAGAGCAGGTTGTTGCAGCTGAGTTTGCTGCTAAGGAAGAAGAGagggagaagaagaaaaaattgaAAAGCGAGAAGGACAAAAAAGCGAATGACCGCAAAGAGAAGAAGAAAGGAAAGCCGAAAGGAAAAGGGGGGAAAGGAGATACCGAGGAAGAAGAGACGGGATGGAAGATGACTCACAGTAATTTCCTTCCTACGGTATTCAAGGGAGCCAAACTGTACAAAGAAGTTTGGCAAAACCGAGATGAACAACAAAACTTCCTTCAACGTTTTGATGCTCAGTTGGTGCGAGAGGAGAAGAGACTGGAGGTTGAAGTGGAGCTCAGAGTTCAGgtgGATGAACTGATGAGGCAGGAACTAAAGAACCTTAAGCTGGTGGTGGACAGAGACAAGggcaagaaaaagaaaaaagtcaagaaaagtaGTAAAAAGAAAAAGAAGAAAGGGCGGAAGACtggaaagaagaagaaaaagaaagagaaagaccTCACAGCTGACAGGACCATAGAATCTCTATATGAGGAACTTGTCCTGGAAGGCATCATAATCAGGCCAATGAATGTCAAGCTGTCAGATTACAtagGTGAATACAGCTACCTGGGCACAACACTACGCCAAGCAGATATTGAGCCTATGCCATCTCTCTCTGACGTCAGACAGCTCATCGCACTTTATGGCATCCTGCCTCTGGGTTCTCAGTGTGTCCATGAAAGAGGGCCCCTGATCCGAGCCCTGCTGCTCACCGGGCCGCAAGGTGTTGGGAAGAAGATGCTCGTCCATGCCCTTTGCACAGAGACTGGGGCTAACCTGTTCAACCTCTCCCCTTCAACACTGGCTGGCAAATATCCAGGCAAAAGCGGACTGCAACTACTCCTGCACATGGTTTTCAAAATGGAACCCAAAAGGCTGAAGAAAACCCTGCCGAAGATCTTGAAATCTATCAAAGCAGAGGACCGTGTGTTAGTAGTGGGGACATCACGCAGGCCTTTTGATGCAGATATCAAACCTTTCTGTAAAGTTTACAAGAAGATCATTTTGATCCCTAGACCAGATTATGCTTCTAGATTTACTCTGTGGAAGGAACTGCTTCAAGCACACGGTGCTCTACTGGACCCTAAACTGGACCTGAGCTCTTTAGCTAAAGTTACTGACGGTTACACACAGGGACACATTCTTCAGGCCATCCAAACCATCCTAATCCCCCACCGCCTGGAGCTGCAGGCCAAGAGACCCCTCACTGCGGTGGAGTTCATCcctcctctcgcaagacaagaCCCTGTCTataaagaagaggaagagagCTTTAAGGCATGGTACAGCCGGACACCTCTGGGCAAAAAACGAGCGCGTGCAGCTAAAGCCAGTGAAGAACAGGCAATTCTTAAAAAAGGGAAAACTAAAGGAGGAAAATTGCAAAAGAAAGGGAAGGaagggaagaagaagaagaaaaagaagtgaAAAGAgccctataaaaaaaaatacaggagcaGTTTATGTTCTGTCCAGCAGAGGGCATTAGCACCTTTTACAAAAACCTGTTTAACTCAAAGTTGAATCCTTTTTATGGTTTCTCAGTGTCTTTTGGTTTAAATGTCTTTCCTCAGGTTCCGCTGTTGACTCTTTATAAAATTTCTTACTTGAATTAAGTATCTAAATGATTTTGGATTActattgtagtttttttattgtgaaaaGGGGATTTTGTGTATGAATGCTTGCACATGTCAGAATGTTCCACACTGAAACTGAGACTGGATTAGTTCAAACTTTCTCATCATTGTGTAGAGCACAAGTGCAAAGCTGGGCCTATTGTTTAATACATATTCTGCATGGGATCtacttttattttgtcatttattaaaatgtgagtgCAATTAATAAAGGACAGTTCTGGACTCTG

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-768 Predicted to enable ATP binding activity. Orthologous to human IQCA1 (IQ motif containing with AAA domain 1).

Ensembl:

ensembl_id ENSDART00000127133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064823 lncRNA upstream 454062 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA upstream 454062 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062512 lncRNA upstream 805259 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 1971327 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1973998 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00062524 lncRNA downstream 2585 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 4233 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 45572 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00064610 lncRNA downstream 97886 15990935 ~ 15993964 (+) False XLOC_031939
TCONS_00064611 lncRNA downstream 98826 15991875 ~ 15993477 (+) False XLOC_031939
TCONS_00062520 mRNA upstream 314651 15373153 ~ 15447996 (+) True XLOC_031934
TCONS_00062518 mRNA upstream 462507 15268685 ~ 15300140 (+) False XLOC_031932
TCONS_00062519 mRNA upstream 462703 15268703 ~ 15299944 (+) True XLOC_031932
TCONS_00062517 mRNA upstream 503228 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062516 mRNA upstream 516113 15210072 ~ 15246534 (+) True XLOC_031930
TCONS_00062525 mRNA downstream 6560 15899609 ~ 15900954 (+) True XLOC_031937
TCONS_00062528 mRNA downstream 138140 16031189 ~ 16034286 (+) True XLOC_031940
TCONS_00062530 mRNA downstream 513674 16406723 ~ 16423323 (+) True XLOC_031942
TCONS_00062531 mRNA downstream 575727 16468776 ~ 16475879 (+) False XLOC_031943
TCONS_00062532 mRNA downstream 575744 16468793 ~ 16475879 (+) True XLOC_031943
TCONS_00062521 other upstream 218477 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062509 other upstream 1781555 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2717146 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3987915 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 4354510 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062540 other downstream 1157990 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 1312143 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 1424508 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 1488436 17381485 ~ 17381582 (+) True XLOC_031962
TCONS_00062555 other downstream 2361351 18254400 ~ 18261416 (+) True XLOC_031969

Expression Profile

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