RNA id: TCONS_00062518


Basic Information

Item Value
RNA id TCONS_00062518
length 714
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_031932
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15268685 ~ 15300140 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGTTGTTCATCTCAGCACTGACCAAATCATTCTCGAGCACACAGTGAAGCCACAGCTGAATAATGTCTCTCCACAGCCTCTGTGTGCCAGCCATTCTCCTCATAAGTGTCCTGTCCATCTGCTTACCCTCAGGAGGTTCATCTGACAGTAAACTTCACAGGATCCTCATCAAACGAGATGCAAAAGAGATAGACAGCAGGCCTAAAGCATACATTTCAGTGCAGCAGTCCAAGGCTAAAGAGTTCCTGTCTGGACTTCACAGGACTAAGAGAAACGTGTGGGACCGAAGTCGACCCGACGTCCAGCAGTGGATCCAGCAATTCATGTACATGGGCTATGATGAGGCTAGACTCGAGACTGACCTCTCTTATTGGATGGACCAGGCTAGATCAAATGACCAGGGCCGGCAGCATCATCACGATGAGAATGCACCGATGAGCCAACAGGACCCCAGATATAACAGACATGGAGCCAATGTTAATTATGATTACTATTAAAAACCCTTGCTGAGCTAACACAACCTATGTTGCATATACTGTCTAATACAAAGGTTTAGCCACCCCTTGATAAATAACATATTTAAGCTATAAAGCTATAAATTAGAGCTGcaggattctggctaaaatgagaattgcaattttttgcttgaaataaagatcacgattttctcacgattctgtagatgtaaaataaaggagaaTATGAGTAATAA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0009611 response to wounding biological_process
GO:0070314 G1 to G0 transition biological_process
GO:0090398 cellular senescence biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110324-2 Predicted to be involved in several processes, including G1 to G0 transition; anaphase-promoting complex-dependent catabolic process; and cellular senescence. Predicted to be located in apical plasma membrane and cytoplasm. Predicted to be active in extracellular space. Is expressed in ectoderm. Orthologous to human ECRG4 (ECRG4 augurin precursor).

Ensembl:

ensembl_id ENSDART00000128090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062512 lncRNA upstream 311297 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 1477365 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1480036 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 1920449 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 2001542 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064823 lncRNA downstream 5625 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 5883 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062524 lncRNA downstream 595494 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 597142 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 638481 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00062517 mRNA upstream 9266 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062516 mRNA upstream 22151 15210072 ~ 15246534 (+) True XLOC_031930
TCONS_00062515 mRNA upstream 25316 15145123 ~ 15243369 (+) False XLOC_031930
TCONS_00062514 mRNA upstream 137489 15127507 ~ 15131196 (+) True XLOC_031929
TCONS_00062513 mRNA upstream 239593 14980761 ~ 15029092 (+) True XLOC_031928
TCONS_00062520 mRNA downstream 73013 15373153 ~ 15447996 (+) True XLOC_031934
TCONS_00062522 mRNA downstream 462507 15762647 ~ 15893049 (+) False XLOC_031936
TCONS_00062523 mRNA downstream 462510 15762650 ~ 15790424 (+) True XLOC_031936
TCONS_00062525 mRNA downstream 599469 15899609 ~ 15900954 (+) True XLOC_031937
TCONS_00062528 mRNA downstream 731049 16031189 ~ 16034286 (+) True XLOC_031940
TCONS_00062509 other upstream 1287593 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2223184 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3493953 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 3860548 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 4250153 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062521 other downstream 243915 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 1750899 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 1905052 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 2017417 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 2081345 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_00747057_00748859.mRNA True 643 mRNA 0.41 2 CI01000024 746731 ~ 748859 (-)