RNA id: XM_039792681.1


Basic Information

Item Value
RNA id XM_039792681.1
length 4004
RNA type mRNA
GC content 0.43
exon number 10
gene id gpr180
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10389951 ~ 10398975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAACTTGACGCAGCTAAGCCTGTTCACTTCTGGCTTCGTGGCTCATTGAATTCGTTAGCTAACGTTTATTTGTCGATAACGTTGAACTGCATAAGGGAAAATGTCGTATTTATTAGTCACGTTTGTGGCTATAGTGCTGCTAAGTTCGGAGGCCTCTGGGAAAAGCGTTACGGGACTTTTTAACAGCGAAGCAGCGAGACAGCAGAATGGCCAGTTCATCACTAAATTTATGTACCAAGGTGATAATGGTATGTTGGTGATCAGGCTGGACAATTCTGCTCTGGCTACAGAGAAGGAGTCCAGATTGCTGCTGTATAAGGATATGGACTCAAGCCTTGACAACCTAAACTGCTCTGAGAGGCTCGCTAAAGCTCACATCCCCGTTTCTCTCAGTGACCAAGAACACAACCAGACGATCCCTCGTCAGTCCTCTCCTACAACCTGGCAGGCCCTATATGCTGACAGATACACATGTCAGgaAAATGCAGTGATTCCTTCCCACGCTGATCTCAGTTTTACCATCTTGTTGTTTAACGCCGACTCGGCTGGAAATCCTCTGGAGCACTTCAGCGCAGAGGAGGCAGGTCTCCATAGTTTTtacttcctcctcctgctggcCTACTTCATAGCCTGCTGTATCTACATCCAGCCTCTGCACCAGGCTCTGAGGAAAGGAGGTCCCATGCACACTGTCCTCAAAGTGCTGACCACCGTGCTGGCATTACAGGGCTTCTCCGCTCTCTGCAACTACATCCACTTCGCCAGGTATTCCAGAGATGGTACTGGTATTCCTCTGATGGGCAACCTGGCAGAGTTCTGGGATATGGTGTCCCAGGTGTCCATGCTGTACATGTTACTGAGTCTGTGTGCGGGCTGGACTCTGAGCCGAGGCAGGAAGCCTCAGTCCAGACCTCTGCAGTGGGAACGGTCTCCGGCGTCCACGGCTGTTGCTGTTGGCGGAGTCGTTCTACAGGGGGCGTTGCTGCTGTGGGAGCAGTACTCAGAATCGGAGAGTCAACATCGCAGCTACCACACCCCGCTGAGTCTGGCAGGTCTCCTCCTCATGGCTCTGAGAGTGGGCCTGGCCCTCCTGCTGGCCTCTGTCCTCTACCAGATCATCTCCACCGAGCGGAGCACCCTGAAGAGGGACTTCTACCTCTGCTTCGCCAAGGGATGCTTCCTGTGGTTCCTCTGTCATCCCGTCCTCTTCGTCACGTCGGCTGTCTTCAACAAGCACCAGAGGGAGAAGGTAGTGACTATCGGTGTTATCCTCTGCCAGGCCATCGCCATGGTGATCCTCTACCAGCTCTTCCTGTCTCGTTCTCTCTACTGGGaggtctcctctctctcctcggTGTCTCTGCCACTCACCATGTCCAGAACGAACCACAGGGGGCGCTACTGAGCACATCCACTCTTGCGCTTTATGAGCGAGGGGAGAAACATGCTACAACACAGAGGCGTCCCACCTCCCTTAACGTCCCAGGGTGTCAGAGGAGGGACACCTCCTGAGCATGAAGACAGAGAGCGGTGTAACACTGCAGGGACCGCTCTCCTTCACTGTTAACTGTTACCTATTGGTTACTGGTAAGCAATTTAGCAGGGAACTGTAGCACGGGGTCACAAAATGACCAGAGGAAGATATTTACAGCAACACCCTACCTCTAGTTACTGGAGCCAACATCTACATTACTGAGCAGGAGGAAAGCTGTTTAATGCAAGACGACCTAGAGAAGGGACACGAGGCTTTCCGTGACACGCTGGATGTCATAATAACTAACAGCCAAAAGTACAGCTTGAAAACCGACTCACGCGAGCatgttaaccctcctgttgtcctcgggtcaaatttgacccgttttcaaagtttctatatatTAGAAATTggggttttttttcaacctaatttcccaaaaataacatggatggttccatacaatgctCTGCTCAAGTTAAATgaaggatcagttcactactttcattgaattgtgggtgttttattcaatgttatagcatttgaaaaaaacagttgGTTTTAAAAACAGCACCCTGACTAAACGTCTACATACCTTCCTCTGATCTtgactattagtcaaaataattcacaatttcagctttttaactCAAACATTAGATATAACTTCATATAAATGACGTTTATTGACCATTAgttccagaaaaaaaaagtgtaaaaaaaaaactaataaattgGTGTTAgtcgtgaaaaaaaaaaaaaaaagcacagaaaaaagagacagaaaagtgTCAATTTTGGACCCTGGAGGACAACaagtcgacgggaagacaacacaagggttaaagatgGATCGCCAAGATTCAAGATTTTAGGATGCGTctgcaaatgaaaaaaaaaaaagattggctCGTGATGGAACAAATACAATCTTTGTGCTCTTGGCTTTGATAATCCCACTTTTATGTCTTAAAGGATAAGGCCggtatatttttcttattgtcaacaaatcccatgaaaagccaaaatcaacaattagtatgtctgtattttttttttacttttcagcCCAGTCTGTGGCCATTGGTTCCTATGAAGAtgttcatttttcaaaacttgtcaaaaatatatagtttcattttcaaaaacgtctccgtgattTCCTAGAACAGCTGGGCGCCGCAGTTGTGACGCAGATGCTACTCAAACAGGAGGAGATTGTGCATTTCTGGGTACTATTTTTTTCACCTGCGGAtgaatccacatttggtgctctggtGAGTATTTCTGGCAGCAGGTCCATGAACGTTGGATTAAGTCAAAACAAactacggtgtgtgtgtgttcatggtaatgaaggaatATGTCACCCATGCAACAGTGTGGCTagttaatgtgtttttaatagttgttggacaacaatggagttCTATGGTAAAGAGAAATGcaatatatcaggctttggctcCACAGACAATACATTGTAGGTCTTTTCATGGGttttatttacaataagagaatactgTAGATTAGTATGTGTATATTAATGAATCAGTATGTGGTAAGATTGATATGTGACTCTGGTTAAACAGATTGAGGTGGAGAGACAGTTGGGCGGACTCAAAGATGGATATACTGAAGAACAGACAGGTGGAAGGATGAATCAAGTTTGGAAAGATGGTTACAGTATGTGGACTGGTAAAGAAATAGATTTTCAGTTACCTATATTAAAAGGATTAGTGAGCCAACAGGTCAGTGTGTGCTCCCTGTACATGATGGATCAAGCTGTACTTTAAGTTATTTCTTCACTCTCAACATGAATTTTTGAACTGACAGCATGTGAACCTTTGGAATTGTATAAACTGTATGTAGCTGGAGACACACTGCACgatcttttatttttcattcactGAACCTTGAGCTGGAGCACACTACCTGGGCCAATGATTTCCCCAATTCCAAACTAACGCTTACCTTTTCTGCCACAAATTATTAAGCCCTGGTCTAAGCCCACTATGACTCCATGTGAGTGAGGCTCATTAAAGCATTAGCGTCGCATGAAAGCCCAGTGGGAACAGGCCTGCTGTTTCattttggacttgacacatttCGTATTGTGAAAAATGAAATTCCACTTAACGTAGTGACGGCTGACATTGAGCGTTGACATATTTATtcattctgtatttatttttgtaagtcAATATTTGTAACGTGAATGAAGAGAATACATCttctatgtattttattttgtcccaCGGGCCACAATGACAATCTTATTTTTattagaaaacaacaaaatataagGCCTCGGTTTGTAATGTGTGTACTAAACTTTTACCCCTCAAATTTTTAGATATGgttcaaatttaatttaattctgTCATTCCCTTTTTTGCATTATGCCCTCTCCAGTTTTTATTACGTGTATTTATTTTCCGATACAACCCAAACTGTGGAAATATGGGATCTGTGGTCATTACAACTGTAATAAAGTAACtgtaataaaatacattttaaggtAACCTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019236 response to pheromone biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317408 lncRNA downstream 2075 10383688 ~ 10387876 (-) True LOC120554082
XR_005638314.1 lncRNA downstream 15020 10373339 ~ 10374931 (-) False LOC120554081
TU317438 lncRNA downstream 15065 10372988 ~ 10374886 (-) True LOC120554081
TU317318 lncRNA downstream 167776 10220878 ~ 10222175 (-) True G233685
TU317299 lncRNA downstream 182476 10206152 ~ 10207475 (-) True G233675
TU317516 lncRNA upstream 65353 10464328 ~ 10465304 (-) False si:ch211-132g1.7
TU317544 lncRNA upstream 326154 10725129 ~ 10725359 (-) True G233855
TU317546 lncRNA upstream 338660 10737635 ~ 10738167 (-) True G233857
TU317547 lncRNA upstream 339362 10738337 ~ 10738549 (-) True G233858
TU317548 lncRNA upstream 344099 10743074 ~ 10743463 (-) True G233859
XM_039792680.1 mRNA downstream 2030 10384949 ~ 10387921 (-) False LOC120554082
XM_039792679.1 mRNA downstream 2378 10384949 ~ 10387573 (-) False LOC120554082
XM_039793200.1 mRNA downstream 102790 10275031 ~ 10287161 (-) True kpnb3
XM_039793196.1 mRNA downstream 124829 10261823 ~ 10265122 (-) True harbi1
XM_039793191.1 mRNA downstream 174479 10208422 ~ 10215472 (-) True unc50
XM_039792686.1 mRNA upstream 13460 10412435 ~ 10428605 (-) True ddx3xb
XM_039792687.1 mRNA upstream 36339 10435314 ~ 10443050 (-) True slc5a3a
XM_039792688.1 mRNA upstream 65347 10464322 ~ 10525085 (-) True si:ch211-132g1.7
XM_039792690.1 mRNA upstream 132852 10531827 ~ 10542635 (-) False LOC120554088
XM_039792689.1 mRNA upstream 132852 10531827 ~ 10542635 (-) True LOC120554088
TU317412 other downstream 2018 10384445 ~ 10387933 (-) False LOC120554082
TU317407 other downstream 2075 10384851 ~ 10387876 (-) False LOC120554082
TU317405 other downstream 2075 10385003 ~ 10387876 (-) False LOC120554082
TU317411 other downstream 2353 10385003 ~ 10387598 (-) False LOC120554082
TU317341 other downstream 117092 10271069 ~ 10272859 (-) True G233703
TU317688 other upstream 549493 10948468 ~ 10958632 (-) False G233954
TU317694 other upstream 550548 10949523 ~ 10951480 (-) False G233954
TU317708 other upstream 550548 10949523 ~ 10950629 (-) False G233954
TU317684 other upstream 568448 10967423 ~ 10969110 (-) True G233954
TU317805 other upstream 641032 11040007 ~ 11046959 (-) False LOC120554127

Expression Profile