RNA id: XM_039792735.1


Basic Information

Item Value
RNA id XM_039792735.1
length 2441
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120554116
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10948321 ~ 10980875 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCAGACCCGATGGCGCTCCGTGCAGTCCTACAGTTCCTTTGTGCGTTGGGAGTCTTTCACAAAGGTCTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCTGCAGGTCACATGGCAGAAACGTTTACCTGAGGGGGAGAAGAATCTAGCTACTTACAGCAACAAATTTGGTAAATCAGTGAATCCTGAATTTAGAAACAACGTGGAGTTTAAATATGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCTCTGTTTGTTTAACATCTACCCTGAAGGTGCTCTCACTGCTACAACCTGCCTCCTTCTCTATGAGCTGCATGAAGCCATTCTCCATGTTGGAGAATCCAACTCTCCTGAAGAGGCAGTAGTGTCCTGCTCGGCCACAGGTCGACCTGCTCCCACAGTTACACTGACTGTCCCTCACCACAACTCTTCCAGTGTCACCAACACCAACGGTACAGTCACTGTCACCACTACAGCTGTGCTGCCTCgtctccatggcaacagcaCACAGGTTGGATGTGCAGTGCGAGTGCTCTCTGGTCCTCAGATAGAGGTGTTCACCATGATTCCTGAGATCAGACAGCCGTCTGCTGATGgttttgatGAGAAATCTAGGTCTGATAACAGTGGTCACAGTCTAACCTCTGTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCTGCAGGTCACATGGCAGAAACTATTACCTGAGGGGGAGAAGAATCTAGCTACTTACAGCAACAAATTTGGTCAAACAGTGAATCCTGACTTTAGAAACAATGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGATGGAGCAGGATGAAGGATGCTATCTCTGTTTGTTTAACACCTACCCTGAAGGAGCTCTCACTGCTACAACCTGCCTCCTTCTCTATGGTCTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGAGGTTCTGCAGGTCACATGGCAGAAACTATTACCTGAGGGGGAGAAGAATCTAGCTACTTACAACAAATACTTTGGTCAAAAGGTGAATGCTGGTTTTGAAGAGAAAGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCGCTGTTTGTTTAACACCTACCCTGAAGGAGCTCTCACTGCTACAACCTGCCTCCTTCTCTATGGTCTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCGGCAGGTCACATGGCAGAAACTATTACCTTATGGGGAGAAGAATTTAGCTACTTACAACAAATACTTTGGTCAAAAGGTGAATGCTGGTTTTGAAGAGAAAGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCTCTGTTTGTTTAACACCTACCCTGAAGGAGCTCTCACTGCTACAACCTGCCTCCTACTCTATGAGCTGCATGAAGCCATTCTCCATGTTGGAGAATCCAACTCTCCTGAAGAGGCAGTAGTGTCCTGCTCGGCCACAGGTCGACCTGCTCCCACAGTTACACTGACTGTCCCTCACCACAACTCTTCCAGTGTCACCAACACCAACGGTACAGTCACTGTCACCACTACAGCTGTGCTGCCTTGCCCTCGCAGCACAGCACGAAAGGTTGGATGTGCAGTGCGAGTGCTCTCTGGTCCTCAGATAGAGGTGTTTACCATGATTCCTGAGATCAGACAGCCGTCTGCTGATGgttttgatGAGAAATCTTGGTCTGATAACAGTGATCACAATTTCACTGTGatccttgtgttgtctgtgGTAATGGCCGGTGTTTGTCTTGCTGTAATCATCACCGTCTGCATCTGGCTCATAAGAAAACACTGGAACTGTGTGTCACACAGGGACTCTGAGGAGAACAAGACACCACAGAAACCAACTAAAGATGATCATGAGCCCAAAACACCTTTAATGAGTCAAGAGAATGAGGTACGGCAACGGGGGtctactgggggaaaaaaacattgcatCTACCCTAAAGTACCGTCTCCAAACTTAAGGTGTAAGCTTAAGCTATTTAGTGGTACAGAATAACCCACAAAGCCGAAGTCCCTGAATGAAGACAGTTGGACTTGAACAAAAACTGCCTCAAAGcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317654 lncRNA downstream 24505 10915974 ~ 10923816 (-) True G233939
XR_005638315.1 lncRNA downstream 99966 10837792 ~ 10848355 (-) True LOC120554109
TU317622 lncRNA downstream 117191 10829346 ~ 10831130 (-) True G233918
TU317619 lncRNA downstream 118061 10827854 ~ 10830260 (-) False LOC120554110
XR_005638316.1 lncRNA downstream 118065 10824907 ~ 10830256 (-) True LOC120554110
XR_005638321.1 lncRNA upstream 56480 11037355 ~ 11046936 (-) True LOC120554127
XR_005638320.1 lncRNA upstream 58234 11039109 ~ 11046936 (-) False LOC120554127
TU317807 lncRNA upstream 60311 11041186 ~ 11094182 (-) True G234024
TU317809 lncRNA upstream 79936 11060811 ~ 11083168 (-) True G234026
TU317810 lncRNA upstream 155752 11136627 ~ 11139188 (-) True LOC120554131
XM_039792733.1 mRNA downstream 819 10931280 ~ 10947502 (-) False LOC120554115
XM_039792734.1 mRNA downstream 2461 10931280 ~ 10945860 (-) True LOC120554115
XM_039792726.1 mRNA downstream 48661 10885752 ~ 10899660 (-) True LOC120554111
XM_039792718.1 mRNA downstream 80818 10854723 ~ 10867503 (-) True LOC120554104
XM_039792709.1 mRNA downstream 162468 10784874 ~ 10785853 (-) True LOC120554097
XM_039792743.1 mRNA upstream 9674 10990549 ~ 10995360 (-) False LOC120554120
XM_039792742.1 mRNA upstream 9674 10990549 ~ 10995360 (-) True LOC120554120
XM_039792745.1 mRNA upstream 30357 11011232 ~ 11013638 (-) True LOC120554123
XM_039792746.1 mRNA upstream 33120 11013995 ~ 11018662 (-) True LOC120554124
XM_039792747.1 mRNA upstream 33480 11014355 ~ 11018662 (-) False LOC120554124
TU317412 other downstream 560388 10384445 ~ 10387933 (-) False LOC120554082
TU317407 other downstream 560445 10384851 ~ 10387876 (-) False LOC120554082
TU317405 other downstream 560445 10385003 ~ 10387876 (-) False LOC120554082
TU317411 other downstream 560723 10385003 ~ 10387598 (-) False LOC120554082
TU317341 other downstream 675462 10271069 ~ 10272859 (-) True G233703
TU317805 other upstream 59132 11040007 ~ 11046959 (-) False LOC120554127
XR_005638322.1 other upstream 409129 11390004 ~ 11441926 (-) False spega
TU318109 other upstream 1307045 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1972215 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 2004942 12985817 ~ 12985888 (-) True trnae-uuc_66

Expression Profile