RNA id: TU156118


Basic Information

Item Value
RNA id TU156118
length 1150
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G132136
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13793156 ~ 13794305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttcacaccaaatattgactttgtttcatttattactgtttactgctctttatagtattttttaaatgtagaaatatttaatttcattatttttgaaggcatctttgctctacagcttATTTGACTTATTCGAAGTTTATTTGactttgtatattttttgtatttatatattttctttggGCTTAAAGGCTTATACGTGTTTTTAAGGGAGCGACCAAGACACAAGTGAGGAACTTCCCAGGCATTATCACTAAACAGGTCATTTcaatgaattgaaaaaaaaacaagtaaagaaCCTGTTTAGATGAAGTCTGTATAAGGATTTTTCCTGTGtatctgttgattttttttattttatttatttttaatttagcggcaactctgaatatggctcTAGAAgtttttgaaaaacatttaacCAGCAAACCTACCTTCAtatgatttttaatgtttattttctcataGTTTATTACGTATCACTGTGTGGAATCTAACATTAGACTGTCATCTAATGTGGGATACGATACAGTTAGTCATTACAGGGCTGTTTAGCAAAGGACGTACGTTCAACAAGGTGTGAACTATGTGGCTGTAGGATGCCGTCTAAATTTTGAGCACAACTCTGAGCATTCTCCCATCACTCTTGATCCTCTTTTGAGCTAGTTTGTTTCACATTTGTGCTTGCATTAAGTGTCATGAGACCTGAAGGACAACAGGttcaaaaacaaatcacagCCGACTAACAGACCTATTAAAGTAGATTCAGTAGTTTTGGAAAGCGTCTTTACTCCTGATTGGATATGCTGATGTCTTGCGCCAGTGTGCCAATGTGTTGCATGTTCTACTGCACTTAACTGAATGACGCTGTATAAAAACTTGAATGTACATATAAGCTAATATAAAtactctgtatttactctggaaTGGGCTGTGTTATAATGTCTATAACTGGCTGGGAGCAGGGAGATGAGCTATTGTTTACACTTTAGGGACTGGGGaacaaaatgtaactgtaaatgtatcAGTATGTGTTTCAGAGcagtaattatatttaaagaGATGACATTGTAtgaagttttatttgtatatatgtatgacGTTTCCATCACAACCTAATTCAGAGAAATTCTATGTGATTATTTATTGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156121 lncRNA upstream 447 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 1877 13790471 ~ 13791279 (+) False LOC113527348
TU156088 lncRNA upstream 222184 13570392 ~ 13570972 (+) True G132115
TU156048 lncRNA upstream 292473 13500389 ~ 13500683 (+) True G132081
TU155890 lncRNA upstream 353426 13437922 ~ 13439730 (+) True G131947
TU156120 lncRNA downstream 277 13794582 ~ 13799616 (+) True G132138
TU156341 lncRNA downstream 96905 13891210 ~ 13948808 (+) False dock8
TU156342 lncRNA downstream 193428 13987733 ~ 14022649 (+) False aopep
TU156369 lncRNA downstream 216198 14010503 ~ 14013621 (+) True G132357
TU156411 lncRNA downstream 291347 14085652 ~ 14087881 (+) True G132391
XM_026915078.2 mRNA upstream 1839 13705167 ~ 13791317 (+) True LOC113527348
XM_034306608.1 mRNA upstream 2880 13705166 ~ 13790276 (+) False LOC113527348
XM_026915087.2 mRNA upstream 2880 13756504 ~ 13790276 (+) False LOC113527348
XM_026913655.2 mRNA upstream 104227 13616607 ~ 13688929 (+) False magixa
XM_026913646.2 mRNA upstream 104227 13616608 ~ 13688929 (+) True magixa
XM_026930414.2 mRNA downstream 28793 13823098 ~ 13833297 (+) False porcnl
XM_026930443.2 mRNA downstream 28793 13823098 ~ 13833297 (+) False porcnl
XM_034306245.1 mRNA downstream 28793 13823098 ~ 13833297 (+) False porcnl
XM_026930423.2 mRNA downstream 29045 13823350 ~ 13833297 (+) True porcnl
XM_034306246.1 mRNA downstream 29045 13823350 ~ 13833297 (+) False porcnl
TU156117 other upstream 85606 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 423537 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 729034 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 731148 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1411086 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 527867 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1185528 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2207756 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2207756 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2608443 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile