RNA id: TU156342


Basic Information

Item Value
RNA id TU156342
length 1910
lncRNA type sense_over
GC content 0.44
exon number 10
gene id aopep
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13949937 ~ 14022687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATGAGGTTCTGCTCCCAGACGTGAACTGCTACTGCTGTCTGGCTTTCACTGGATACCAGCTACCgcacatctgtctctctctgtctctctttctcactttctttttctcactcacttttGCTTCTCACCTATTCTAACCTCCCTGTCTTCATTATCACTATTCCCTGCCTGTCTTTCCCTTCTCCCTTTCCCTCTGTCAATTTCTGGGTTTTTCTCACTCAcccaccgtgtgtgtgtgtgtgtgtgtgcgggagagagagagagagagcgcgcgaGAGAAGAGCAGTGTACTGGCAGAGCAGACTGTAATAAGGTTAAGTGCAGCTTGCGTGAGAGCttgaaggaaggagagagagaatgtaagaGAGAGACCGGACGACTGGAGGAGTGGATCAGAAAGGAATTGACGCCCCATTTCAAGTTAATGAGGgaatttttccttctctctccctctctgcctctctttctttccactcaacattctcctcctctcttcctctcctccagTGGCTTGGTGAAGCCAGCTCGACGTGGTCACACTCTCCGCCAGTCACACAAGTCACAGAGGAGGTTGTAAAATGGGTGCACCTCAGTGGTGGCACTCGAAAGGGCACCAAGCGGAAGAGAGCGGGGCCCAAGGTGAACTTCAAAGAGTTGAATCCGTGGCAGTTGGTCCTGCTGTTGGAATTCCTGCTAGAAGAGACGGAGCTGAGTGCGTCCTGTCTCAGCCTGCTGCAAGCGACGTACAAACTGCGGAACCAGGATgctgagGTGAAACATCGCTGGTGTGAGCTGGTAGTCAAGCATAAATATGCAGCTGCATATAGAGATGTTGAACACTTCCTCATTCATGACCAGGCTATGGGTGTATATCTGTATGGCGAGCTGATGCTGCAGGAAGACGGACGTCAGCAAGCTTTAGCACGACACTGCCTGTCATCCATCAAAGATGATATGGACCAAACAGCACGCAAGATTGTGGAGGAAATGATCCTCTAATTTAGGAAAGGGGCAGGACCCGATGCAGGCTCTCTTCTTCAGGCTCAGGCTTCCGAGTGTGAAATCAGCTCAGgaaccCAAGTGGATCATTGACAATACTAATGTAAGAGTTCTAGagtgaataatatatatttttaaagtcaGTGCTGTATGTTGTTCTGCTCCACTGGAAGAATTTCACTAGACTACAGCACCCGCAGAAGCAAATACATGGTAACAGTTTGTGTTACAAACATGAAAAGATGACTCAAATTTTCATGCAAAACATATAACTAGAATATCAATGCTGAGGTTACGAGTATTTGGAAACACTGAAAGGTCAGTTTCTAGTATTTAATGCTGCTTGGTCACTTGATGCTATAACTACTGAAATGCTACTGCTATACAGCTTTTATTGTGAAGTTATTTAAGCACCTTGTCAACTAGGCAATGCAATAACTCATATTACAATAGTGCTTCTTTCCATTGTGACTGCCAGTTATGTGATTTCATTGTCaattctgttcattttatattatttatgttttttaaggattttggaaataaaatgaaagatgcTCTACATCAATCAATCACTTTATATGATCATAATCTGATCTTATCTGTATAAGGAAGTATACCGGCCATGTGGAGCAGCAGTGTAGTTCTTATTTAGATTTAGCTTTAGTTTTAGTGCCGTAGAAGACTATAGGAGCAGGCTGGATTTGGTATACTTGGTGGTGTTTTTGAGAAAGACTGGAACAGAGTAAAAGAATAGAGGAAGAGGCTGTGCTGAGACACTGAGGCCAGCTGGGAGACTACTGATGATGGAGGCCTTTGGATTTAGCCACATCCTGGTGCTGGgaggaaataaaacATCATTGCTGTCTCATATCTACACATATGTAAAGACACTGATGACTTGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156341 lncRNA upstream 38925 13891210 ~ 13948808 (+) False dock8
TU156120 lncRNA upstream 188117 13794582 ~ 13799616 (+) True G132138
TU156118 lncRNA upstream 193428 13793156 ~ 13794305 (+) True G132136
TU156121 lncRNA upstream 195024 13791862 ~ 13792709 (+) True G132139
TU156119 lncRNA upstream 196454 13790471 ~ 13791279 (+) False LOC113527348
TU156411 lncRNA downstream 63003 14085652 ~ 14087881 (+) True G132391
TU156373 lncRNA downstream 94326 14116975 ~ 14120415 (+) True G132361
TU156430 lncRNA downstream 210379 14233028 ~ 14234254 (+) True G132405
TU156445 lncRNA downstream 222927 14245576 ~ 14246134 (+) True G132420
TU156449 lncRNA downstream 226473 14249122 ~ 14249718 (+) False G132424
XM_026913277.2 mRNA upstream 39453 13890404 ~ 13948280 (+) True dock8
XM_026913286.2 mRNA upstream 40763 13902945 ~ 13946970 (+) False dock8
XM_026913293.2 mRNA upstream 40763 13906561 ~ 13946970 (+) False dock8
XM_026925627.2 mRNA upstream 102066 13879111 ~ 13885667 (+) False lrif1
XM_026925618.2 mRNA upstream 102066 13879449 ~ 13885667 (+) False lrif1
XM_026924980.2 mRNA downstream 132209 14154858 ~ 14171793 (+) True ercc6l2
XM_026925009.2 mRNA downstream 132209 14154858 ~ 14171793 (+) False ercc6l2
XM_026924990.2 mRNA downstream 132209 14154858 ~ 14171793 (+) False ercc6l2
XM_026925000.2 mRNA downstream 132691 14155340 ~ 14171793 (+) False ercc6l2
XM_026925017.2 mRNA downstream 134387 14157036 ~ 14171793 (+) False ercc6l2
TU156117 other upstream 280183 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 618114 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 923611 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 925725 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1605663 12381999 ~ 12382070 (+) True trnad-guc_1
TU156645 other downstream 299523 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 957184 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 1979412 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 1979412 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 2380099 16402748 ~ 16419509 (+) False si:ch211-166a6.5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071359 False 760 mRNA 0.50 6 NC_007119.7 30159509 ~ 30242706 (-)
grasscarp (Ctenopharyngodon idella) TU578922 True 270 lncRNA 0.48 1 CI01000347 1642069 ~ 1642338 (-)
tiger barb (Puntius tetrazona) TU94902 False 828 lncRNA 0.47 7 NC_056706.1 14385604 ~ 14422900 (-)