RNA id: TCONS_00071359


Basic Information

Item Value
RNA id TCONS_00071359
length 760
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_036528
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 30159329 ~ 30316436 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAAGTGCTGAGCGAGCGTGCATGTGAAGATCTTTACTGGAGAAACTCCTCTGTTTCAACTTAACGAGGGGATTTTTGTCCTGGTGCCGTGTCGAGCGGTCAGTTGCCATCAAGGAACAAGtgattctctctgtctctctctctctttccactCAACATTCTGCTGCTCTCTTCCTCTTGTTCAGTGGCTGAGAGACGAATGCTCAGAATGGTTGCGGACTCCAGCGGTGCAAGAAGTCAAAGGAGAGGTTGCAAAATGGATTCACTTCAGTGGCTCTGGTGGAAAGGGCAGCAAGCGGAAAAGAGCAGGGCCCAAGGTTAACTTCAAAGAGCTGAATCCAGAGCAGCTGGTGCTTCTGCTGGAGTTTCTTCTAGAGGAATGCAATCTGAGTGCGTCCACGCTGAGACTCCTTCAGTCCACTTATAACCTACAGGCTCAGGATGCTGAGGTGAAACATCGCTGGTGTGAACTTGCGGTCAAGCATAAACACACCGCCGCATACCGAGACGTTGAGCTCTTTCTGATCCATGACCAGGCTATGGGTGTGTATTTGTACGGAGAGCTAATGGTCCAGGAAGACGCTCGGCAGCAAGCATTAGCACGCCGCTGTTTATCCATCATTAAAGATGACATGGACCAATCAGCACGCACCGTTGTGGAAGAAATGATCCTCTGAGCTCACAAATCAGGTTTCAGAACTGTCTGCTCTCTAGTCACATGTTCAACTGAGGGAAGTCAAGCAGGATCCCGCTGTCATC

Function

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-115 Predicted to enable metalloaminopeptidase activity and zinc ion binding activity. Predicted to be active in nucleolus. Is expressed in central nervous system; lateral line system; neural tube; pectoral fin; and tail bud. Orthologous to human AOPEP (aminopeptidase O (putative)).

Ensembl:

ensembl_id ENSDART00000139864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072479 lncRNA downstream 304492 29853229 ~ 29855017 (-) True XLOC_036526
TCONS_00072065 lncRNA downstream 465559 29691710 ~ 29693950 (-) True XLOC_036521
TCONS_00071345 lncRNA downstream 523586 29581495 ~ 29635923 (-) True XLOC_036517
TCONS_00072478 lncRNA downstream 1431502 28726874 ~ 28728007 (-) True XLOC_036516
TCONS_00072477 lncRNA downstream 1612833 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00071365 lncRNA upstream 9692 30252398 ~ 30284448 (-) True XLOC_036528
TCONS_00072480 lncRNA upstream 677243 30919949 ~ 30921272 (-) True XLOC_036536
TCONS_00071382 lncRNA upstream 815969 31058675 ~ 31059896 (-) False XLOC_036541
TCONS_00071383 lncRNA upstream 825840 31068546 ~ 31069632 (-) True XLOC_036541
TCONS_00071385 lncRNA upstream 857264 31099970 ~ 31100590 (-) True XLOC_036542
TCONS_00071356 mRNA downstream 228688 29898715 ~ 29930821 (-) True XLOC_036527
TCONS_00071354 mRNA downstream 307803 29770098 ~ 29851706 (-) False XLOC_036525
TCONS_00071355 mRNA downstream 336982 29775416 ~ 29822527 (-) True XLOC_036525
TCONS_00071353 mRNA downstream 440116 29718692 ~ 29719393 (-) True XLOC_036524
TCONS_00071352 mRNA downstream 445914 29711774 ~ 29713595 (-) True XLOC_036523
TCONS_00071366 mRNA upstream 83196 30325902 ~ 30395888 (-) False XLOC_036532
TCONS_00071367 mRNA upstream 83831 30326537 ~ 30338872 (-) False XLOC_036532
TCONS_00071368 mRNA upstream 84166 30326872 ~ 30424182 (-) True XLOC_036532
TCONS_00071369 mRNA upstream 487922 30730628 ~ 30742233 (-) True XLOC_036533
TCONS_00071370 mRNA upstream 515463 30758169 ~ 30779101 (-) True XLOC_036534
TCONS_00071349 other downstream 461227 29688511 ~ 29698282 (-) True XLOC_036520
TCONS_00071333 other downstream 1863713 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071329 other downstream 1903868 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071322 other downstream 2334332 27823381 ~ 27825177 (-) False XLOC_036502
TCONS_00071318 other downstream 2431423 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071377 other upstream 757208 30999914 ~ 31000028 (-) True XLOC_036539
TCONS_00071379 other upstream 797460 31040166 ~ 31041878 (-) True XLOC_036540
TCONS_00071393 other upstream 1153118 31395824 ~ 31403948 (-) True XLOC_036545
TCONS_00071398 other upstream 1449553 31692259 ~ 31701030 (-) True XLOC_036549
TCONS_00071428 other upstream 2545144 32787850 ~ 32794476 (-) True XLOC_036564

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU156342 True 559 TUCP 0.43 4 NC_053122.1 18844905 ~ 18846277 (-)
striped catfish (Pangasianodon hypophthalmus) TU156342 False 1910 lncRNA 0.44 10 NC_047602.1 13987733 ~ 14022649 (+)
bowfin (Amia calva) TU156342 True 851 TUCP 0.50 6 CM030136.1 23181921 ~ 23185168 (-)