RNA id: TCONS_00071352


Basic Information

Item Value
RNA id TCONS_00071352
length 820
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_036523
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 29710110 ~ 29713621 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCTGGCGATCATGAAGTCAAGAGCATTTCACCTGCTGATGCTCTGCTGTTTTATCAGTGTCTGCAACCTGCATCCACTTATTCGTCCTAATAATGGACTGCGATTGTGCCGCAAAAACTCAAGTTTGACAGCACTGGAGGTTCTACCAGGCGGAGGATGGGATAACCTGCGCAACATAGACATGGGCAGAGTGATGAATCTGAGCTATTCTCAGTGTCAGACCACAGAAGATGGAGTCTATCTCATTCCAGATGAAGTCTTTGTCATTCCACAAAAAaaaacCAGCGCATGAAGACCCACCAAGTGAAAGAGGGTTCTGTTACAGCACGGGTTCAAGTCCGTAACCATCTGTACACAGTAAAGGCGTATCCTGACTTCACTCTGGACTCCCGCTTTGCAAAACAGGCAGAAGAAATCGCTGACGCCATTGAAAACAATCAAACACGTCATGCTAATTATTTGTCAGAGAAACTCGTACTTGATTACGGCACCCATGTCATCACAAGTGTTGATGCTGGAGCCACATTGGTGCAAgaagattatttaaaaatgtcttatatCTCCAACAGTCAGTCAGACAAGTCTTCTGTTTCAGCATCAGCCGGCGCTAACTTCTTTGACAAAGTTAAATTTGATATTGGTGGGAATACCTCCCAAGGCAGCTCTCAAAGCAGTAGTTATCAGGGCAACATCACCTATTCTTTAATTCAGAGCCACGGAGGAGCTTTATTCTACCCAGGCATCACTCTGCAGAAGTGGCAACAAAGTACGCTCAATAATCTGGTGGCAATTGACCGCTCTGGGCTGCCGCTGCACTA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7347 Acts upstream of or within defense response to bacterium. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Is expressed in blood island; digestive system; immune system; reproductive system; and trunk. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human MPEG1 (macrophage expressed 1).

Ensembl:

ensembl_id ENSDART00000131988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072065 lncRNA downstream 17824 29691710 ~ 29693950 (-) True XLOC_036521
TCONS_00071345 lncRNA downstream 75851 29581495 ~ 29635923 (-) True XLOC_036517
TCONS_00072478 lncRNA downstream 983767 28726874 ~ 28728007 (-) True XLOC_036516
TCONS_00072477 lncRNA downstream 1165098 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00072476 lncRNA downstream 1246321 28462504 ~ 28465453 (-) True XLOC_036513
TCONS_00072479 lncRNA upstream 139634 29853229 ~ 29855017 (-) True XLOC_036526
TCONS_00071365 lncRNA upstream 538803 30252398 ~ 30284448 (-) True XLOC_036528
TCONS_00072480 lncRNA upstream 1206354 30919949 ~ 30921272 (-) True XLOC_036536
TCONS_00071382 lncRNA upstream 1345080 31058675 ~ 31059896 (-) False XLOC_036541
TCONS_00071383 lncRNA upstream 1354951 31068546 ~ 31069632 (-) True XLOC_036541
TCONS_00071350 mRNA downstream 4892 29701428 ~ 29706882 (-) True XLOC_036522
TCONS_00071348 mRNA downstream 34472 29672915 ~ 29677302 (-) True XLOC_036519
TCONS_00071347 mRNA downstream 34474 29670527 ~ 29677300 (-) False XLOC_036519
TCONS_00071346 mRNA downstream 53603 29655948 ~ 29658171 (-) True XLOC_036518
TCONS_00071344 mRNA downstream 1056436 28654289 ~ 28655338 (-) True XLOC_036515
TCONS_00071353 mRNA upstream 5097 29718692 ~ 29719393 (-) True XLOC_036524
TCONS_00071354 mRNA upstream 56503 29770098 ~ 29851706 (-) False XLOC_036525
TCONS_00071355 mRNA upstream 61821 29775416 ~ 29822527 (-) True XLOC_036525
TCONS_00071356 mRNA upstream 185120 29898715 ~ 29930821 (-) True XLOC_036527
TCONS_00071357 mRNA upstream 445734 30159329 ~ 30242840 (-) False XLOC_036528
TCONS_00071349 other downstream 13492 29688511 ~ 29698282 (-) True XLOC_036520
TCONS_00071333 other downstream 1415978 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071329 other downstream 1456133 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071322 other downstream 1886597 27823381 ~ 27825177 (-) False XLOC_036502
TCONS_00071318 other downstream 1983688 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071360 other upstream 448897 30162492 ~ 30162633 (-) True XLOC_036529
TCONS_00071361 other upstream 453840 30167435 ~ 30167525 (-) True XLOC_036530
TCONS_00071362 other upstream 454035 30167630 ~ 30167704 (-) True XLOC_036531
TCONS_00071377 other upstream 1286319 30999914 ~ 31000028 (-) True XLOC_036539
TCONS_00071379 other upstream 1326571 31040166 ~ 31041878 (-) True XLOC_036540

Expression Profile

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