RNA id: TCONS_00071348


Basic Information

Item Value
RNA id TCONS_00071348
length 907
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_036519
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 29670527 ~ 29677302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGAAGGGGACTTTTGAGATTGTTGCATACTCAGTGTGGGTAAGACTTCATTTTTGAGTGATATTTGAGGAAATTCAATGCATTTTCAACaagtaaaaatgcttttttaacagtacaatttaaaagcattaaaatagcaACATTTTATAAACAAGCAAAACTATTTGAACTCTGCATGAACCAAATTATTCTCTAGTCTTACAggaatttaactgtatttttcCTGCAGACATGGAAACAAATCACTGTGTTTTCCACGTGTTCTTCTGCATTTCTTTGTGTTTGGTGCTCTGGGACTCAAGTTTAGCTTGTCACACTGGCTCTCAGGCAGAATGTGAAAAAGCTCCATTTGTGCCTGGTTACAATCTGGCAGGAGAAGGCTTTGACTTGGTCAAAATGCGACGTAAAGGTGCCTTTCTGATTAATGTCAAGTCATACTCAGTCAACGGTACCTGTACCATCTGCAAGAACCGCTTTCACGGAGATCAGATGCAGAAACTTCCCTCAGCCGTGCTGGACTGGCGTATCTTCAGCACTACAGCACAGCCTTCTACTGCTCTTCATCATTCAGTTGATTCCCTCATGAAGAGTTCAACGTCACTCATTAATAACAACTGGAAAGTGGATCTTCGACTGGATGACACAGGAAAGGTGATTTTTGGAGGGAGTCGATCAGATATTGCTCAATTTGCCCATTCTCAGAGTGCAAAAGATAAAACAACCTTTGCCCTCCACGAAATCAGCTGTACATACTACAGTTACAGATTAAGAGACCACCCAGAGCTCAGCACTGAATTCTCAAAACATCTCCAAACACTTCCAACACAGTATGATGACCAATCTAAACACCTGTACCAGAAAATGATCGAAACCTACGGCACTCACTACATACGCCAAGTCCATCTG

Function

GO:

id name namespace
GO:0019835 cytolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-126 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis. Is expressed in gill; liver; muscle; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000143623

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071345 lncRNA downstream 36992 29581495 ~ 29635923 (-) True XLOC_036517
TCONS_00072478 lncRNA downstream 944908 28726874 ~ 28728007 (-) True XLOC_036516
TCONS_00072477 lncRNA downstream 1126239 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00072476 lncRNA downstream 1207462 28462504 ~ 28465453 (-) True XLOC_036513
TCONS_00071325 lncRNA downstream 1444570 28223652 ~ 28228345 (-) True XLOC_036503
TCONS_00072065 lncRNA upstream 14408 29691710 ~ 29693950 (-) True XLOC_036521
TCONS_00072479 lncRNA upstream 175927 29853229 ~ 29855017 (-) True XLOC_036526
TCONS_00071365 lncRNA upstream 575096 30252398 ~ 30284448 (-) True XLOC_036528
TCONS_00072480 lncRNA upstream 1242647 30919949 ~ 30921272 (-) True XLOC_036536
TCONS_00071382 lncRNA upstream 1381373 31058675 ~ 31059896 (-) False XLOC_036541
TCONS_00071346 mRNA downstream 14744 29655948 ~ 29658171 (-) True XLOC_036518
TCONS_00071344 mRNA downstream 1017577 28654289 ~ 28655338 (-) True XLOC_036515
TCONS_00071343 mRNA downstream 1223133 28448267 ~ 28449782 (-) True XLOC_036512
TCONS_00071342 mRNA downstream 1264505 28398780 ~ 28408410 (-) True XLOC_036511
TCONS_00071341 mRNA downstream 1315738 28350921 ~ 28357177 (-) True XLOC_036510
TCONS_00071350 mRNA upstream 24126 29701428 ~ 29706882 (-) True XLOC_036522
TCONS_00071351 mRNA upstream 32808 29710110 ~ 29713621 (-) False XLOC_036523
TCONS_00071352 mRNA upstream 34472 29711774 ~ 29713595 (-) True XLOC_036523
TCONS_00071353 mRNA upstream 41390 29718692 ~ 29719393 (-) True XLOC_036524
TCONS_00071354 mRNA upstream 92796 29770098 ~ 29851706 (-) False XLOC_036525
TCONS_00071333 other downstream 1377119 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071329 other downstream 1417274 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071322 other downstream 1847738 27823381 ~ 27825177 (-) False XLOC_036502
TCONS_00071318 other downstream 1944829 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071315 other downstream 2065962 27596435 ~ 27606953 (-) True XLOC_036498
TCONS_00071349 other upstream 11209 29688511 ~ 29698282 (-) True XLOC_036520
TCONS_00071360 other upstream 485190 30162492 ~ 30162633 (-) True XLOC_036529
TCONS_00071361 other upstream 490133 30167435 ~ 30167525 (-) True XLOC_036530
TCONS_00071362 other upstream 490328 30167630 ~ 30167704 (-) True XLOC_036531
TCONS_00071377 other upstream 1322612 30999914 ~ 31000028 (-) True XLOC_036539