RNA id: XM_026926644.2


Basic Information

Item Value
RNA id XM_026926644.2
length 2081
RNA type mRNA
GC content 0.48
exon number 9
gene id nfyal
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12438112 ~ 12447984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTTGTTGGAATGCGGGTGGAAACATTAACGTTCCTTCGCAGTGTTGTTCATTTGCGCCATTTTGTCAGCACGCTGTGGTGATTGGGTTTTTGAGCTCTGTACTGGAGCCAATCAGAAGGGAACCGGACAGCTGAGAAACGATCAGTGGAATTGGTGAAGGAAATGGAGCAGTACACCTCCACAAGCAGTGGGGAGCAGATAGTTGTACAGGCAGCTAATGGACAGATCCAGCAGCAGGCACAGGGTACAGTCACAGCTGTACAGCTGCAGACCGAATCGCCTGTCGCTACAGCAGCCGGTCAGCAAGTGCAGACGCTCCAGGTAGTCCAAGGCCAACCGCTTATGGTGCAGGTGAGTGGAGGTCAGCTGATCACCTCTTCAGGGCAGCCCATCATGGTACAGGCCATGTCTGGAGGCCAGGGCCAGACCATAATGCAGGTGCCTGTCTCTGGAGCTCAGGGCTTGCAACagATCCAGTTAGTGCAGCCGGGGCAGATCCAGCTGCAGGGAGGGCAGACGCTGCAGCTACAGGGGCAGCAGGGTCAGGCCCAGCAGATCATCATCCAGCAGCCCCAGACCGCCATTACTGCAGGACAGAACCAGggcCAGCAGATTACAGTCCAGGGCCAGCAGGTTGCTCAGACTGCTGAAGGCCAGACCATTGTGTACCAGCCCGTGAATGCAGATGGCACTGTGCTACAACAGGGAATGATCACAATCCCTGCAGGCTCACTATCTGGCACACAGATCGTTCAGGCAGCAGGGGGCACCAACACTTCTACCACCAACAGTGGGCAAGGCACAGTCACAGTCACGCTGCCAGTGTCTGGCAATGTGGTTAGTACAGGAGGGATGGTTATGATGGTGCCTGGGGGAGGAGGCACAGTACCCACTATCCAACGAATCCCTCTGCCTGGTGCTGAGATGCTGGAGGAGGAGCCACTCTATGTCAATGCCAAACAGTACCACCGCATCCTGAAAAGAAGACAAGCCCGTGCCAAACTGGAGGCTGAGGGCAAGATTCCTAAAGAGAGGAGGaaatACCTACATGAGTCACGGCACAGGCACGCCATGCAGAGAAAGCGGGGCGATGGCGGCCGCTTCTTTTCACCAAAAGATAAAGAAGAAATGGCTCTAGCCATGCAGGTGAGACCACAGGAACAGGCCGGAGTCAAACAGGAAGACTTCCACAGAGCCACCGAAATCGCAAGCTCACACTGGCTACCTGAGCAAACCGTTCCTCTTGCTTAGCTGCTGTTCTCTGCTCTCATTGGCTGCTTGCTCATGCACTCACTGGCAACACTGTGTCCACCTCCATCCTTCTTGCTTAGCTGAAGCATTGCTTTTTCCAAGTGTTTTTCACAGGtgcttttgtgttgtgttgtggtttttttccccccctcttaAAATGCTACTTCATCAGCATTTTAACACCGGACAATTTGACTGAAAGCCAAAGTTGCTGAGCTAAAGTCGGCAGAGCTTTTTGTACATACTGGTGAAATAGGATTCTAGTCAGCTCTGTAGCAGCCAAGGGCACAcagtccactttaatagaaTACATGATTCTTTATGTCTGTGCTTTTAAATATAGTGTACAGTTACAGAGTTATGATATtgttaaaatgttcatgtagggaaaaaaaactctgcaAGTATGAACAATTTGCattggtgttaaaaaaaaaaacttaaatgttatgttatttagaatgtaaaaatgaattttgtaTGAAGAATGCTTACTGAGATGTTTTGTATTAAAGCACCTGGGATCATGTTACCTTTTATAAAAGAAACAGTTACGTTTAGGAGCACAATGAGAGAATTTGGTACCACAGAGAATGTCATGATGCAGTGTCTGTAAAATAAGCTTctttcctcctgtctgtctgatttATCCATCACATACGGCATTCTGCTATGTTACATTTGTGTTCATCCTCtgcctgtgttttttgttttgttttgcaattCTTACATCCTGCTTCTTTGCTGCCATGTGTTGTGATTTTATCCTTTTTTGCAATAAATTTATCAGAACAGTAAAATGTTCACCAGCTTGCTCCCAAAACCTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016602 CCAAT-binding factor complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155063 lncRNA upstream 209497 12228214 ~ 12228615 (+) False kcnq2a
TU155070 lncRNA upstream 211750 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 220898 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 443312 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 445073 11992819 ~ 11993039 (+) False foxp3a
XR_004578623.1 lncRNA downstream 73187 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 73187 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 156810 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 243460 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 254005 12700712 ~ 12701501 (+) True LOC117597872
XM_026915908.2 mRNA upstream 4966 12414194 ~ 12433146 (+) True sort1b
XM_026929291.2 mRNA upstream 41452 12390255 ~ 12396660 (+) True amigo1
XM_034306268.1 mRNA upstream 115236 12314904 ~ 12322876 (+) False gnat2
XM_026918246.2 mRNA downstream 3568 12450275 ~ 12473747 (+) False ahcyl1
XM_026918236.2 mRNA downstream 3572 12450279 ~ 12475750 (+) True ahcyl1
XM_034306408.1 mRNA downstream 11015 12457722 ~ 12473747 (+) False ahcyl1
XM_026918254.2 mRNA downstream 11016 12457723 ~ 12475750 (+) False ahcyl1
XM_026922840.2 mRNA downstream 31911 12478618 ~ 12509666 (+) True kcnc4
trnad-guc_1 other upstream 56042 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 727567 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 728680 11705655 ~ 11709432 (+) False porcn
trnav-cac_9 other downstream 615229 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 617343 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 922841 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1258549 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1875465 14322172 ~ 14323450 (+) True G132595

Expression Profile