RNA id: AMCG00001259


Basic Information

Item Value
RNA id AMCG00001259
length 7552
RNA type mRNA
GC content 0.53
exon number 46
gene id AMCG00001259
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22051870 ~ 22083241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGAGGCTTGGTACTGGTTGGCTGTGGGAGAGGAGCCAGAGTAACTGTTTGGGAAGGACTAGCCTCAGGGATTACATTTGCACCGCTCTCCCTGTTTAAGTTTGATGTGCTCAAGACACAGTTGACAGTTTCTAGCCTTCGCGTTCGTCCAGACTCTCCCCAGCTCCACAATGACCAGTGGCCCTGTGACAGGGTTGCTGGTTGCGCTGTGCATTGGCAGCGCTGTGCATTGTATGCCCAAACACGCAGGCAAGAGCCGGAGGCATGCGCAGCAACAAGTAATATTCCCCATCGAAGATGCACCATCAAATCAGGATGGCTGCCTTGAAGGCGACCGATTTTATAGACCAAACGAGCAATGGGAGCGTGAGTACCTGGGCAGCACGCTGGTGTGCACTTGTCACGGGACTACAGGAGTTAAATGCAAAAGCAAGCCAGAAGCTGAGGAGACTTGCTACGATAAAATCAATGCACAGTCCTACCGTGTAGGAGAGACTTACGAGCGTCCAAAGGATGGTATGATCTGGGACTGTACTTGCATTGGATCTGGCCGAGGGAAAATTAGCTGTACTATTGCAAACCGCTGCCATGAGGGGGGACAGtcttacaagattggagacaccTGGAAGAGGCCCCACGAGACTGGCAGCTACATGCTTGAGTGTGTGTGCCTGGGCAATGGAAAGGGAGAATGGACATGCAAGCCTGTTGCTGAGAGATGCTATGACAATAATGCTGGCACTTCGTATGTGGTTGGGGAGACCTGGGAAAAACCATATCAGGGCTGGATGATGGTGGATTGCACTTGTCTGGGCGAAGGCAGCGGACGCATCACCTGCACTTCCAGAAACCGATGCAATGACCAGGACACTAGGACCTCTTACAGAATCGGAGACACCTGGTCCAAAGTCGACACCAGAGGAAACACCCTTCAGTGCATATGTACTGGCAATGGTCGTGGGGAATGGAAGTGCGAGAGACACGCATCTCTACACACGACAGGCATTGGCACAGGATCACGTGTGGTGACCAACGTGCAGACCGCGGTGTACCAGCCCCAGCCCCATCCCGAGCCACCCACCGAAGGAACCTGCATCTCTGAGACTGGGGTCTCGTATAGCGTGGGGATGCGGTGGTTAAAGACACAAGGCAGCAAGCAGATGCTCTGCACATGTTTGGGCAATGGAGTAAGCTGCGAAGAGTGGGGCCAGTCACAGGTGTATGGTGGCAACTCCAATGGCGAGCCCTGCATTTTCCCCTTTGTGTTCATGGGTAAGACCTATTACTCCTGCACTTCTGATGGCCGCAGTGACGGGCAGCTGTGGTGCAGCACTTCCTCTGACTACGAACAGGACCACAAATACTCCTTCTGCACAGAGAAGAATGTTTTGGTTACAACAAGAGGCGGCACCTCCAATGGCGCACTGTGTAGCTTTCCTTTCCTTTACAATGGCCGCAACTACACTGACTGCACTGCTGACGGTCGGAGGGATGGCATGAAGTGGTGCGGCACGACCAGCAACTATGATGGCGACCAGAAATTTGGCTTCTGCCCAATGGCAGCTCATGAGGAGGTGTGCACCACCAGTGAGGGAGTCATGTACCGTGTGGGTGACCAGTGGGACAAGCGCCATGATGTCCTGGGTCACATGATGAGGTGCACATGTATGGGCAATGGTCGTGGGGAGTGGAGCTGCATTGCTTACTCACAGCTCAGAGATCAGTGCATTGTGGATAGCCTGACCTACGAGGTGAACCAGACCTTTACCAAGCGCCATGACGAGGGATACATGATGAACTGCACGTGCTATGGACAGGGCCGTGGCAGATGGAAGTGTGACGCTATTGACCAATGCCAAGAACCAGAATCTCGAGTTTTTTACCAAATTGGAGAATCCTGGGATAAGGTTATCCATAACGTCCAGTATAAGTGCTACTGCTATGGCAATGGGATTGGAGAGCTGAGCTGTGAACCCACACAGCCATACCCTGCTGGCCATCACCCAGTCCAGGTTCTTATCACAGAAAATGGCAACCATGCCAATTCTCACCCTATCCAGTGGAATGCCCCACAGTCTGCCCACATCATCCAGTACATCCTCAAGTGGAGACCGaaaaacacccaTATCCAGTGGAAGCAGGTTGTTGTTCCTAATCACCTCAACTCCTACACCATCGCGGGCCTGAAGCCAGGCATCACATACGAGGGCCAGCTGATCAGTGTCCTGCGATACGGACCCAGAGAGGTCACGCGCTTCGATTTCACCACGACCTATGGATCACTGTCCACATCTGAGGGTGAGACCACACCACCCCCCCTGGTCGTGGATACTTCCGAGTCAGTGACTGAGATCACCTCCAGCAGTTTCGTGGTGTCCTGGGTGTCTGCATCGGACACGGTGTCGGGATTCAGAGTGGAGTATGAGCTCAGCGAAGAGGGATCCCAGCCTAAGATTCTCAACCTGCCTCATACCGCTACCTCTGTCAACATCAATGAACTTCTTCCTGGTCGCAAGTACATTGTGAATGTGTATGAAGTCACAGATCAAGGGGAGCAGAACCGCATCCTCACCACCTCTCTAACAACTGCTCCCGATGCCCCATCTGATCACCTTGTCGATGAGGTGGCAGAAAGCTCTATTGTCATCAGCTGGTCCAAACCCCTGGCTCCTATTACAGGCTATCGTGTGGTCTACACCCCTTCTGTGGAAGGGAGCAGCACTGAGCTCATCCTGCCTGACACTGCCACCTCAGTTACCCTGAGCGACCTGCGCCCCGGTCAGCTCTACAACATCAGCATCTACGCCGTGGAGGAGAATCAAGAAAGCGAGCCCGTGTTTGTGCAGGTTAACACTGCTGGGGACCCACTGCCAGCTGAGACTGTGCAATCCCCCACAGACCTGCAGTTTTTGGAAGTCACCGATGTCAAGATCACAATCACATGGAAGCCTCCTCCTCAGAGCCAGGTGTCTGGGTATCGTGTGACCGTCCAACCAGAAGGCCTTCCTGGTGCATCTGGACAAGAGAGGCACCTGCCAGTCACCAGCAACCCTTTTGCAGAGGTCACCCACCTCCAGCCCGGCACTACATACCGCTTCTACATCTTCGCGGTCAACGGAGGGGTGCAGAGCGAGCCCTTGGTGGCAGAGAAGACCACCAAAATTGACACCCCCACCAATCTGCAGCTCGCCAATGTGACCGATgatggggtcattgtcatgtgGGGTGTCCCAAGGGCCAGAATTTCTGGATACCGTCTCTTGTTAAGCATCAGTGGGGGACACCCTAAACAGTTGAGGATCTCCCCCAGGGTGTCCCAGTACACTCTCGGAAACCTTCGGCCTGACACTGAATACACAGTCACGCTTTATGCGGAAAAGGACAATATTCACAGTGATGCGGTCTCTGGAGTCTTCCGCACCTTGGAACGCACAGGAGTCGCCCCTCGTTTCAGCACTGATGTAACGGACACCTCTATTGTCATCACTTGGACCCCCGTGCCACGAATTGGATACAAGCTGTCAGTGAGGCCTAGCCAGGGTGGAGAAGCCCCCCGGGAGGTGACCTCTGAGTCGGGCAGCATCTACATCTCAGGCCTGACCCCAGGGGTGGAGTACACCTACAGCATACAGCCCACCGTTAACGGGCTGGACCAAGGCACACCCGTCACCAAGAGGGTCACCACACAGCTGTCTCCCCCGACTGACTTGAACTTGGAGTCGAATCCAAACACTGGAGAGCTGATTGTCTCCTGGGGGGATGCTAAGACTCCTGACATCACTGGGTACAGAGTGACCTGCACACCGACTGGTGGCCAGCGAGGAAACTCCCTGGAAGAATTCGTCAAGGCCGGCGAGAACTCCTGCACCCTGGAGAACCTGAGTCCAGGCATAGAGTACAACGTCAGTGTGTACACGGTCAAAGACAGCATGGAGAGCACACCGGTCTCTACCACTGTCACGCAAGACGTCCCCAAGCTCACTGACCTCAACTTTGTCAATGTCTCCGACACCACAATTGGATTGAGGTGGAACCCCATTAACTTTACCGCTATCACTGGCTACCGCATTACTGTGGTTGCTGCCGGAGAAAGTGTCCCCATTTTTGAAGACTTTGTGGAGCCCTCAACAGGATATTACACTGTCCATGGACTGGAGCCCGGCATTGACTATGACATCAGTGTGATCACCCTCACTGAGGGCGGCGAGAGTGAACCTACTACCCTGACACAGCAAACTGCTGTTCCAACACCAACCGACCTTCAGTTTGCTGATGTTGGTCCCGATACTATGAGAGTGACATGGACTGCCCCCAAGACTGTCACCATTTCTCGTTTTGTGGTGCGCTACTCTCCTGTGAAGAATGATTTGGATGTCACTGAGGGCAGTGTTCCTGCTACAAGCAATAGTATTATTCTGAGAAATTTGCTGCCTCACACGGAGTATTCTGTCAGTGTGTCCTCTGTGTATGAAGAAAGGGAGAGTAGGCCACTCACTGGGACTCCGAAAACAGCGCTGGACTCCCCTACTGGTATTGATTTCTCCGAGGTGTACCCCAACTCCTTCACCGTGCACTGGTTGGCTCCCCGCGCAGTCATCACCGGCTACAGGATCCGCTACCAGATGGCAAGTGGCGGGCGGGCGAAGGACGAAAGACTGCCACCGTCTCGCAACCAATTCACCCTGACTGGACTGGCCCCTGAGACCGAGTACAACATCCATATCTTCGCCGTCAGCGGTTCTGATGAGAGCCTGCCCCTCACTGGTCACCAGGCAACAATTTCTGATGCTCCTACTGATTTGGAAGTCGCCTATTCTACCCCCACAAGTATAACCATCAACTGGGAAGCCCCCCCAGTCACCGTCCGATACTATAGGATCACCTACGGAGAGTCAGGAGGCAGCAGCCCGACCAGAGAGTTCACTGTCCCAGGCCCCAAATCCACAGCCACTATTGATAACCTGAAGCCAGGTACCGACTACACCATCACCGTGTATGCTGTGACTGGGAGAGGGGACAGCCCTGCTTCTAGCACCCCAATCAAAGTCACCCACAAAACCGAAATCGAGTCTCCCTCCGAGATGGAGGTGGCTAACGTGAAGGACAATGCCATTACTGTGAGGTGGACCCCTTCAACTGTACCTGTTACTGGATACAGAGTTACTGGGATTCCCAAGAATGGCCTTGGACCTTCCTTCTCTGAGGTTGTGGCCCCTGaTCAGAGTGAAATCACATTCTCGGGTCTGATGCCAACGGTTGaatatgttttcagtgtgtATGCCCAGGGCCAGAATGGAGAAAGCCCTCCCCTTGTAGAAACTGCCTTCACCAATGTTGACCGCCCAAAAGGCCTCTCCTTCACAGATGTTGACACCTCCTCCATCAAGATAGCCTGGGAGAGCCCCGAGGGCCATGTGTCCACCTACAAAGTGATCTACTCCAGCCCAGAGGATGGGGATCGTGAGCTGAGACCAGCCCCCACCGGGGACGATGACACTGCAGAGCTGCATGGTCTGAGACCAGGCACTGAATACACCATCAAGGTCATTGCCCTCTACAATGGCTTGGAGAGCCAGCCGCTCTCTGGAACACAGACCACAGACATCCCTGCTCCCACTGACTTACAGTTCAGCCAGGTTGCTCCATCCAGCCTGACCATTTCATGGCAAGCCCCCAATGCCATACTCACTGGCTACCGTGTGGTGGTCAACCCCAAGGACAAGACTGGACCAACCAAGGAGTTCAATCTTGCGCCAGACACCACCCAGGCCTTTGTATCTGGATTAATGGTTGCTACCAAATATGAAGTAAGCGTCTTCTCCCTGAAGAACTCCCTGACCAGCCGACCGGCTCGCGGAGAAGTTGTCACCCTTGACAATATAAGCCCACCCCGTCGCGTTAAGATCACTGATGTGACCGAGTCGGCTATCACTCTCACCTGGCGTTCCAAAACCGAAACCATAACTGGCTTCCATATCGACGCGATTCCAGCTGGCAACCAGAGGCCCATTACAAAGACCGTGCATCCTGATGCCAGGAGCCACACCATTACAGGCCTACAGCCAGGCACACAGTACACCATCAACATTTACACCATGAATGGTGAAGCACGCAGCGCTCCGTTCAGTTTGATTGTAACCACAAATAAGCCAGCAGTTGAGTCTCCAACAAATCTGAGATTTATCTCCATCACCCCAAACACCATTTCTTTCACCTGGGAACCTCCTCGCACCAGGATCACTGGCTATTTCATCACTTATGAAGAAGAAGGTGGAAGCCCCAGAGAACTGTCCCCAAGACCTCACGCTGGCATCAGCCAGGCTACTATTTCTGATTTGAGACCGGGCACAGATTACATCATCAGGATCATCGCTTTACAAAATGCTTTAAGAAGTGCTCCCCTAAGTGGGAGAGCCAGAACACAACTTGAAGCACAGCTGCCAAACCCCCAGCGCCCAGTGCCCGATATCCTGGATGTGCCCGATCAACAGCAATTCACCACAGTCCCCAGATTTGATGACGAGAATGGAGTGCAGCTGACAGGCACCAATGGTTTTGACAAGCAAGGACAGCAGGGCCAGCACATATATACTGAGTACCAGAGTCATCGCCCCAATGTTGGGCCCCATGGCACTGAGCCCCATCTTTACATTCCTAGCCAGGGTAAAGATGGAGTCAGATACCCTGTTCCTCCGGTGGTTCGAGTGATTGAACCGCCTGTGCTGGGCTCTCAATTTCCTATTCCAGACAATGAGACAGACACCACCCAGGAAGCCCAATCCCAGACCACAGTCTCTTGGATGCCTCTGCAGCAGATCTCAGAGTACCTCATCTCCTGTCACCCTCTCTCGCACAACGAGCAGTTGTTCCAGtTCCGTGTGCCAGGAACTGCCACCAGCGCTACCCTAACTGGCCTCACATCTGGAGCTTCCTACAACGTCATCGTTGAGGCCTTGAAAGGAGCGTTGAAGCAGAAGGTTTTAGAGGAGATCATCACAGTACAAAATACTGATGGAGCTCCTGCAAAAGACATGTGCTATGACACTTTCACTGCAACGTACCACGAAGTCGGGTCCGAGTGGGAGCGCATGTCCGAGACCGGCTTTAAGCTGTGGTGCACTTGCTTGGGCTTTGGCAGTGGTCATTTCAGATGTGATTCATCCAAATGGTGTCACGACAACAGCAACAACTACAGGATTGGTGAGAAATGGGACCGTCAGGCAGAGAACGGACACATGATGAGCTGCACGTGTCTGGGCAATGGCAAAGGAGAGTTCAAGTGCGAACCTCATGAGGCTACCTGCTATGATGAAGGGAAGATGTACCAGGTAGGACAGCAGTGGCAGAAGGAGTATCTGGGAGCTATCTGCACCTGCACTTGCTTCGGTGGACAGCAGGGCTGGCGCTGTGAGAACTGCCGCAGACCTACAGGTGATGTAGATGTCTCCTTGCCATCCACACACACCCAGTTCTCAGACCGATACGGGGAAAACATCTTGAGGAAAGTTGTGAACAGGTTTGACAGGAATATCCTCATGCTGATACTATGA

Function

GO: NA

KEGG:

id description
K05717 FN1; fibronectin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163009 lncRNA upstream 72073 21978053 ~ 21979797 (+) False AMCG00001260
TU162995 lncRNA upstream 101067 21910033 ~ 21950803 (+) True G130014
TU162991 lncRNA upstream 185245 21826245 ~ 21866625 (+) True G130010
TU162988 lncRNA upstream 227272 21824258 ~ 21824598 (+) True G130008
TU162982 lncRNA upstream 228976 21821725 ~ 21822894 (+) True G130002
TU163085 lncRNA downstream 118789 22202030 ~ 22205125 (+) True G130090
TU163093 lncRNA downstream 146173 22229414 ~ 22230522 (+) False AMCG00001269
TU163121 lncRNA downstream 243399 22326640 ~ 22326878 (+) True G130125
TU163149 lncRNA downstream 416794 22500035 ~ 22500792 (+) False AMCG00001278
TU163153 lncRNA downstream 499075 22582316 ~ 22582621 (+) True G130152
AMCG00001260 mRNA upstream 59538 21971299 ~ 21992332 (+) True AMCG00001260
AMCG00001254 mRNA upstream 698429 21343867 ~ 21353441 (+) True AMCG00001254
AMCG00001253 mRNA upstream 711582 21319470 ~ 21340288 (+) True AMCG00001253
AMCG00001252 mRNA upstream 736224 21304273 ~ 21315646 (+) True AMCG00001252
AMCG00001249 mRNA upstream 825028 21224605 ~ 21226842 (+) True AMCG00001249
AMCG00001265 mRNA downstream 77150 22160391 ~ 22169050 (+) True AMCG00001265
AMCG00001269 mRNA downstream 106667 22189908 ~ 22238654 (+) True AMCG00001269
AMCG00001271 mRNA downstream 219289 22302530 ~ 22321173 (+) True AMCG00001271
AMCG00001272 mRNA downstream 301479 22384720 ~ 22450890 (+) True AMCG00001272
AMCG00001278 mRNA downstream 416924 22500165 ~ 22530836 (+) True AMCG00001278
TU162879 other upstream 774991 21271384 ~ 21276879 (+) True G129913
TU162840 other upstream 973000 21077135 ~ 21078870 (+) True G129877
TU162800 other upstream 1109473 20942072 ~ 20942397 (+) True G129843
TU162792 other upstream 1126630 20918558 ~ 20925240 (+) True AMCG00001241
TU162705 other upstream 1375013 20611272 ~ 20676857 (+) True AMCG00001236
TU163362 other downstream 1083022 23166263 ~ 23166656 (+) True G130335
TU163702 other downstream 2350552 24433793 ~ 24454385 (+) True G130616
TU163730 other downstream 2500938 24584179 ~ 24591475 (+) False AMCG00001315
TU164194 other downstream 4773358 26856599 ~ 26863132 (+) False AMCG00001361
TU164234 other downstream 4868667 26951908 ~ 26954597 (+) True AMCG00001365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074046 False 8776 mRNA 0.49 46 NC_007120.7 15362300 ~ 15424639 (-)
grasscarp (Ctenopharyngodon idella) CI01000037_01538390_01570296.mRNA True 8199 mRNA 0.52 46 CI01000037 1537928 ~ 1570488 (-)