RNA id: AMCG00003499


Basic Information

Item Value
RNA id AMCG00003499
length 777
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00003499
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 6375259 ~ 6376299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATATCCATTGTTCACCGCATACACCACCACAGGAGAAGATATACCACAAGGGTTCACACTGAACGCCCCAAACCACTTGAAGAGCATACAAATGATGAACTTCATGCAAGATTTAGATTTGGTCGGGAGGACATTCAGTTCATTACCAATGTACTTCAACCGCATCTGGAACACACCACTCAAAGAAGTTATGCCTTGACTGTTGACGAACAGGTCCTTATGGCTTTGCGCTTCTATGCATTTGGAGCATTTTACCAAGTCATTGGAGACAGTTTGCGCCTCCATAAATCCACAATCAGTTCCTTGGTACACAGAGTTTCCTCTGCATTGGCCAGCCTTGTCAgccaGGAGAGTAATATCTTCCAAATATTTCAACAAAACCCCCCAGAGGGCATTATACTAGGTGACAGTGCGTACCCACTCTTACCATGGCTAATGACAGCTTTTGCCACAGCAAGCACTGATGCAGAGGAAAGATTCAACAGCGCCCATGGAACAACCAGGAGCACAATTGAGCGCCTAAATGGAGTGTTGAAGAGGCGCTTTGCATGTCTGAACTACCTAAGTGTTGAGCCACAGCGAGCATGCAACATAATTCTCACCTGTATTGTCCTTCATAACATAGCTCAAACACGCAAAGTTCCTCTCCATGATGACAGTGGTGATCTTCCACAGCCCCAAGTGGATGGCCCTGACACACCACTCCCAGCATTGCAGCTGTATGGACGAGCTGGAAGGTCAATGAGAGATGCTCTAGTGaacctttattattaa

Function

GO:

id name namespace
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1177 lncRNA upstream 388865 5986038 ~ 5986394 (+) True G990
TU1170 lncRNA upstream 419439 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 545514 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 816744 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 818953 5550745 ~ 5556306 (+) True G907
TU1358 lncRNA downstream 697105 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 988645 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 1113146 7489445 ~ 7489881 (+) True G1218
TU1445 lncRNA downstream 1121768 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 1147562 7523861 ~ 7750465 (+) True G1241
AMCG00003500 mRNA upstream 107752 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003496 mRNA upstream 459667 5914471 ~ 5915592 (+) True AMCG00003496
AMCG00003497 mRNA upstream 549527 5824581 ~ 5825732 (+) True AMCG00003497
AMCG00003498 mRNA upstream 605322 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003495 mRNA upstream 621998 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003501 mRNA downstream 244512 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003505 mRNA downstream 347231 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003506 mRNA downstream 442317 6818616 ~ 6825710 (+) True AMCG00003506
AMCG00003507 mRNA downstream 451630 6827929 ~ 6870265 (+) True AMCG00003507
AMCG00003513 mRNA downstream 663512 7039811 ~ 7040909 (+) True AMCG00003513
TU1202 other downstream 111393 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 2272826 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 2879529 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 3401209 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 5113886 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile