AMCG00003524 (rps7,LOC107668222)


Basic Information

Item Value
gene id AMCG00003524
gene name rps7,LOC107668222
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7498040 ~ 7504015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003524
GAGGACAGCAGGACAGGAGACACCGGACACGTGTTCAGCAGATGGAGCCGCATCCGGCCTGGAGCTACAGCTCGCTCCCCTGTGGGGCGGTTACACTCGGCTCCTGGGGGCTTCACTGTTCACCGATGTCCAACTGATAGGGAATCGTGCACATATACGTAATGGCCTGTGATTGTGTCTGAAAGGGGCTTTGATCCAGTGCAAACGAGCATAAGTAGCAGCAGAAATGCATTAACCATCGTTTATTTGAAAGTAGAAAATATCATGGTTATTATATCAAACATAAATAAGCTGATGTATCCATATCATTCTGTCGTGTCTTCGATCGACAAGTACAGCAACCGAACAGAGTCGTATCTGACTGAACCTTCACGCCATGGACGCGCTGAAGAGCCATGAGCCCCGGATGTGCTTAACAGGAAGTGCACAGCGACCCCCCGCTCCCATGATCCTTCACTCCGACGCGCTTTTACCCGCTTCTCGCGAGACTTCGGTCTCTTCCTAGGCCGTCATTGACTCAGAGATAGGCCATGTTCAGTACCAGCGCGAAAATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTTGAGTCCGGCATTTCCCAGGCTCTTCTGGAGTTGGAGATGAACTCTGACTTGAAGGCTCAGCTGAGGGAGCTCAATATCACTGCTGCTAAGGAAATTGAAGTTGGTGGTGGCAGAAAAGCAATCATCATCTTCGTGCCTGTGCCCCAGCTGAAATCCTTCCAGAAGATCCAGGTGCGGCTTGTTCGGGAGCTGGAGAAGAAGTTCAGTGGCAAACATGTGGTCTTCATTGCGCAGaggaGAATTCTGCCTAAACCAACAAGGAAAAGCCgcaccaagaacaagcagaagCGTCCCAGAAGCCGCACACTGACCGCTGTGCACGATGCCATCCTTGAAGACCTGGTCTTCCCAAGTGAGATTGTTGGCAAGAGGATCCGTGTGAAACTGGACAGCAGTCGGCTCATCAAGGTTGAGACCTTCTCTGGTGTCTACAAGAAGCTCACTGGCAAAGATGTTGTATTTGAGTTCCCAGAATTCCAACTgtaaaatgactaaataaattTGTTTAccgtcattttatttttcaagagtGGTATTTTGAATGTCTGTTTCTATATTGTATCTTAAAGTAAATTTGAATGAAATCTTTGGTTGTAAGCATGGTTAGGTTTTAAACTACTCCTGTAGCTTTACATGCCTCCTTTACAATTGAATGACTAAGTATACAGTAGCATAGGTGATCTGTATCAAAGAAACCTTTGAAACAACCATTCCTTCTCATTTATAAACTCAAGAACCCAACGTGGATATCCTGTGAGGTTGCTCTCACGTGGCTCTGTCCGTGTGGCGTATGGGAGCGTAGCACTGCGGTGCTGTGACGTACAGTCCCGTTCCACGACGTTGGAGAGCAAGCGTGTCCCCGGCCTTTGGGCTGGTGTGGACAGCGTCCTGTATATTCCTACATCTTCCCAGAGTCTTTAGACCATTACTGGGGAGGTAAACCATGCAGTGCACattcatgatttgtttttaaattgcattccaTTTCCCATCATTAAGATGAGCAGTTACTGACCTAACCAAAGTTtgtatgaaattaaactttttaacACTCCTTTTAAGAAGCCTGAAAATTAGTTCTGCGTCATATGTTATGATGATGTTTGTTAGCGTTTGATTTGAGATGTTCTGAACATTTCCGGTCTATGTGAAGAATTGAAGATGAGAGTTCCAGTGGAAAAACCCAAGACTAATACTTTAGATGCTTATGCCCATGTAAACTGGTACCATTAGAGTACAGGTAGTTGCAACAACGATGGTTCTTTTAAAGCTGAAGATGTATGCCTATATTGATGACTGACCTTTAGGGATGGTAAGGTGGTAAATAGTGGTTTCTCCATGGGCACCATACAATATGCAGTCTATTACCATTCTATAGTCTTTATAATGTACTGATTTCAATTGCATGATGGCCATAACGTATATTCTGGTTACTTGACACTCATTTGggcattgttttttaacaacTTTCACTAATGTATAATCTCATTTGTATGTCTTATCTGAAGAAACCATGCATTTCCCCCTTAATCTTTATagattgttttataaaaaaatccTGCCATGCCATTGATTGTTGATCAGTATTTGGGAGTAAAAAGAATGAATCCAGCCAAagcaccattttttttttttttttactataaagAATATTCTAAAAATCACTCAAGTAaaacttgattttaaatttcTTTTGAAGCCAGAAATGGGTTTTTCAATTAAGGTAGGTAGTGGTTTTCTTGCATCTTTTGATGGTTTTACATCACGTTAGAAgccgccgcccccccccccccacacttttttttttttttttt
>TU1445
CACGTGTTCAGCAGATGGAGCCGCATCCGGCCTGGAGCTACAGCTCGCTCCCCTGTGGGGCGGTTACACTCGGCTCCTGGGGGCTTCACTGTTCACCGATGTCCAACTGATAGGGAATCGTGCACATATACGTAATGGCCTGTGATTGTGTCTGAAAGGGGCTTTGATCCAGTGCAAACGAGCATAAGTAGCAGCAGAAATGCATTAACCATCGTTTATTTGAAAGTAGAAAATATCATGGTTATTATATCAAACATAAATAAGCTGATGTATCCATA

Function

symbol description
rps7 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development; hemopoiesis; and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7).

NR:

description
PREDICTED: 40S ribosomal protein S7

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02993 RP-S7e, RPS7; small subunit ribosomal protein S7e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003524 True 2401 mRNA 0.43 7 7498040 7504015
TU1445 False 278 lncRNA 0.53 1 7498067 7498344

Neighbor

gene id symbol gene type direction distance location
AMCG00003527 NA coding upstream 15834 7466921 ~ 7482206 (+)
AMCG00003529 NA coding upstream 38564 7453411 ~ 7459476 (+)
AMCG00003522 trappc12 coding upstream 59593 7422803 ~ 7438447 (+)
AMCG00003523 NA coding upstream 87911 7408545 ~ 7410129 (+)
AMCG00003516 NA coding upstream 450637 7045216 ~ 7047403 (+)
AMCG00003521 NA coding downstream 1448 7505463 ~ 7514410 (+)
AMCG00003525 NA coding downstream 14036 7518051 ~ 7531125 (+)
AMCG00003526 NA coding downstream 28538 7532553 ~ 7547554 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding downstream 474760 7978775 ~ 7980197 (+)
AMCG00003532 rsad2 coding downstream 780812 8284827 ~ 8292218 (+)
G1218 NA non-coding upstream 8159 7489445 ~ 7489881 (+)
G1187 NA non-coding upstream 132563 7364944 ~ 7365477 (+)
G1146 NA non-coding upstream 424431 7073404 ~ 7073609 (+)
G990 NA non-coding upstream 1511646 5986038 ~ 5986394 (+)
G983 NA non-coding upstream 1542220 5955604 ~ 5955820 (+)
G1241 NA non-coding downstream 19846 7523861 ~ 7750465 (+)
G1242 NA non-coding downstream 22844 7526859 ~ 7528458 (+)
G1253 NA non-coding downstream 292436 7796451 ~ 7796854 (+)
G1271 NA non-coding downstream 771747 8275762 ~ 8276983 (+)
G1291 NA non-coding downstream 836251 8340266 ~ 8340592 (+)
G1012 NA other upstream 1003135 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2163288 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 2975640 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3042898 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 1145110 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 1396441 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 1571875 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 1751813 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 2273493 9777508 ~ 9781756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_07482540_07486516 RPS7, GM6472, RPS7.L coding CI01000325 null 7482023 ~ 7486516 (-)