G1271


Basic Information

Item Value
gene id G1271
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8275762 ~ 8276983 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1499
CTCgtatttaatcaatttattgAGAAATTAGggaatactgtacattttacaagtaaaacagtgtaataaaatgtaaaaatacaatcacTTTTAGATAACTTACAAATGTCAGGATTAACTAGATGAGATGTGCATATGAGGACTTCAAGCAGTGAGAATAAATGCAGGTGacttttatcatttaattttacatgtGCTGCTTATTTACTGGAATAAAACACAGGCATGGTGAATAGTATCGCCTGAAGTCCTGAACATTTCCCATTGGGTGACTATGTGACAAGCTCTAAACATGTCATGGGACACCCCATACAAAAGTGTTTACTGTGCTCTAGAAGGACTAGCtggTCCACGGATCGAGGTGTGATAAAACATTAACACCTGGCAAGCAATtacaaactgattttatttactgGACATGCAGTAGTtacaatacagattttttttttaagtacaagCAGTCAAAAAATCACCCAACTCAATATGTGATTTTGCTCCCTAGTTCCTCttctacaaaacaaataacataatcaataataaatacagctcAATGATTGAATGCATCAAACTGATTTTACTCACTAAGCAAAACCCACATTTCAACACACTGACCTCTATAATGATGTGTCCTAGTCTCCCTTAAGTGATCTTTATTTGATTCTTATTTATTgactgattggctgattgattgtttaattgattgattgattgattgattgattgattattttgtcCATATTGCTTGCCCTATCGAAAGAGtttctgaaaagatgcattaaaaccaaaaaccatTGCTTGAAGTGTGCACTACAAACATATTAGCATGTAATGCTATTAGTGCTCAAAAACGATGTCCAAAGAATCACAGAAAAATGCATATGgtgaaatgcatattaaatcAGTAGAGATCCAGAAATGCATTTGGGTTTAGCTATTGGACTGCTCTGCATGCAGCTGATTCCACCTACACTTCAATAGAGTCGGTAATGTAGGTGCAGGTCTGTCTGAGCAGGTATCCAGAGCATATTAACAGCACTTCAGTGCCACCTAGTGCTGTTCTAAAAATCCTCTCTGTAGGTTTCTTTAAACGTGGAATTTACTTTGAACTAATTGCAGCACTTCTTGTAAAACCTCCTCCCTCGAAGGACTGGCATCAACAATAGTACAGACAGGATCTCCAATCCTCCGGTACGTCTC

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU1499 True 1197 lncRNA 0.55 2 8275762 8276983

Neighbor

gene id symbol gene type direction distance location
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 295565 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 728208 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 744637 7518051 ~ 7531125 (+)
AMCG00003521 NA coding upstream 761352 7505463 ~ 7514410 (+)
AMCG00003527 NA coding upstream 793556 7466921 ~ 7482206 (+)
AMCG00003532 rsad2 coding downstream 7844 8284827 ~ 8292218 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding downstream 40055 8317038 ~ 8337650 (+)
AMCG00003535 NA coding downstream 542429 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 681158 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 688728 8965711 ~ 8977843 (+)
G1253 NA non-coding upstream 478908 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 525297 7523861 ~ 7750465 (+)
G1242 NA non-coding upstream 747304 7526859 ~ 7528458 (+)
G1218 NA non-coding upstream 785881 7489445 ~ 7489881 (+)
G1187 NA non-coding upstream 910285 7364944 ~ 7365477 (+)
G1291 NA non-coding downstream 63283 8340266 ~ 8340592 (+)
G1303 NA non-coding downstream 166757 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 384049 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 422483 8699466 ~ 8700554 (+)
G1375 NA non-coding downstream 566844 8843827 ~ 8844082 (+)
AMCG00003524 rps7,LOC107668222 other upstream 771747 7498040 ~ 7504015 (+)
G1012 NA other upstream 1780857 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2941010 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3753362 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3820620 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 372142 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 623473 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 798907 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 978845 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1500525 9777508 ~ 9781756 (+)

Expression


Co-expression Network