AMCG00003544


Basic Information

Item Value
gene id AMCG00003544
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9075890 ~ 9106765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003544
GTGGCTGTTGCGCGTCGGGTTTATTTCGGTGTCACACCGGAAGTTCCGCTGTTTATACTGAACACGTGAGAGTGGGAAAACCTGCCGCCAGTCTAAAACTATTAAAGCACATATTCCTGTGTACAAATGGATGATGAACATACTaAAGACTACCGGGAGCCCTGCGAGCAGTGCTGCATGGTGGACTGGGGCCTCACGGACGAGGGCAAGTTCTTCTGCAGGTCTTGCCACAATGTCATCGAGGTGAGCATCTTGAGCTACTGGGACAGCTGCCTCAAAAACAGCGCCGTCCTGTCTCTAAAAGGTTTACGAAAAAAGAAGGAACTAGAGAGAGGCCGGGACTGGATGGTGTGCGAGGGATTTCAGGTTATTCTTAAACTGCAAGCTGACGCCCTCATTGCTATGGGGGTCCGCCCAGAGTTCAAAGTATGTATTATGCTGGTGGTTGgaCGAGATCCTGTGGACTTTCTGGCGTCGATATCTGCAGAAGAGTCATCAGGCCTACAGCAACCATTTGGATCGTGGTGTCAGATCAAAAATATGGTGTCCGTCAGTGTGGCCTCTGTGTGTTCGGGCTCATTGGACGGGGGGCTCTACAGCATCCGGAAGAGAAGGGAGAAGACGCTAATGAGCATGCCCATGACACTGGCCTTCTGCTACCTGTCGTTACTGTGGTTGCGGGAGCCAGTCACCTTGGCCGAACTCCTCAGGCTTGTGGCCGAGGGGCACATTCCCTATGTCAACGTGTACGAGGTCCTCCCGGAAGAAATGAAGCTGTTTGGTCAAGATGCACAGCTGTTTCGTACAGAGACCATCCCCTCATATAGTGTCATAAAGCGAGACACGAACCGTATTGCAGTGTTCCTGGACCTGCCCTGCTTTCCACAGATCACAGAAGACTGTTTGCTACATCCCAATCTGCTTTGCATCAAATACCTCATGGAAACCAATTTACCAGAGGAACTGCACACCTGGGTCCTTAGGGTGATAAAGCATGCTGGCATGGGGGAGGTGCGCTTCCTGACCTATGACCCCCTGCGTAGAAAGGGAAAACTTCTGAACTATGACATCCAGGCTGCTGCCCTGATCATTGTCACTCTGAAACTGCTGTTCAAACTGGATGACAAACTGGAGTGGTGCGTCTCCCTTCAGCTCTATCGCTTACGTGTgGATTTATCTAACAAGGCCgatgaagaaaacaagaaaaacaaagATGAAATGAGCTTTAGTTTCCGGAAGTGGTACAAAACAGTCAAACCGGCGCTGGATGAGGCACAGGAGAAGGATGATAATGATATTGCCAGAATGTCATGGAAACCCAGCAAACCCCTCTATCGCTCCATGGATGCAAAAACTGTTGTCCTGAAGAAAAGGCGTATGGTAGAAAACCTGCAGCTGCATTTCGAGAGGCTCTCTGATTCAGCCCCGGACCCCCCCAGAAAGAGACCCTCCAGCTTCCTGTTTGCGTGGGATGAGGACAGACCTGATGCACTCTGTTTCCACCGGTCTCAGCTGGGCAGCACTGTGATACAGAATACAAACCCCACTGTACTCTCCAACAAACAGTACTGGCACACTGCATTGCGGTCATGTGACAAAAGaaAATGTGGAGACCATTTTAAGACGGACAAGCACACACTACCCAGAAGCTACCTGTTTGTGCTCAGCTTGTTCTCCTTCCTACTGAAAGTCAATGTTTCCTTTATACATGCAGCGGTCCATGAAGTTGAATGCAGATTCTTAAGAAAGGTTTCAACGCAGAAGAAGATAAAGAAAGTTAAAAAGATATATAccctgtaaaaaataaaaaatacttttgcgAATGGGCTTTCTGATCTTTTAggctattgtttgttttttggaagcTGCATGTctggaaatgtattaaacattactGTATAGAACACTGCCTTTTACTTTAAGTCATTTGACACCCATGTGTACATTTCTGGAAACGTTGTTGTGATCGTTGGAAGAATGTGTACACCGTTAAGCCACTGTGCTTAAACTGGAAAGCACTGGTTATTTGGAGCCCAGTTTCCAGCATAGACTGTTGACTGGGGAAGGTGCAATCACTTCCTCTTGATCACTATTAAATTAGCCGTGCTTTTCAAGACCGCACATTATTATCACTGTTTTTGGAGTTGTCACAGAATTACAGGACAGTGACATTCCCGAGTGTACTGGTGTTATGATTGGGCTTAGCTTTGATTACCAAGATGGTTACTGCATTAATCTTAGTCTTGCCCGTCTCTGTATCTGACTCTTATTTATGAATCTGGATTAATAAAACTGGATTATTCAAGCTTTGTTTCTTGCCAATCAATTGTCGCAAATACCTTATTAGCTGTAAATGTAAGA
>TU1701
CCTTTTGAATGTCATGTAGCTTTGCAGCCAGTAATTGCAGTGGTGTATGAGCAGGGATTACTGAaccaatgtttttctttgtttgcaatGTCAGCTTCCACTTGCACTTAAACACAGAGACTCGGAACATAAAAGCACACTGCAGCCATTGTGCGCATTGCCAAACAGACTATAGTTATGTGATCAATGAGTTTCAACCTTTTTCCAGTTTAGTTCCTAACAGTCTTCTTCAACCTTGTCtcttttcttcaaaatgttgttatttatgttttgggcAGTTCACAATAATTGCAACATACTGAATTACAACAGGAACTGGATAACAGCGTCATTCTGTCAGTCACATGGaaAATGTGGAGACCATTTTAAGACGGACAAGCACACACTACCCAGAAGCTACCTGTTTGTGCTCAGCTTGTTCTCCTTCCTACTGAAAGTCAATGTTTCCTTTATACATGCAGCGGTCCATGAAGTTGAATGCAGATTCTTAAGAAAGGTTTCAACGCAGAAGAAGATAAAGAAAGTTAAAAAGATATATAccctgtaaaaaataaaaaatacttttgcgAATGGGCTTTCTGATCTTTTAggctattgtttgttttttggaagcTGCATGTctggaaatgtattaaacattactGTATAGAACACTGCCTTTTACTTTAAGTCATTTGACACCCATGTGTACATTTCTGGAAACGTTGTTGTGATCGTTGGAAGAATGTGTACACCGTTAAGCCACTGTGCTTAAACTGGAAAGCACTGGTTATTTGGAGCCCAGTTTCCAGCATAGACTGTTGACTGGGGAAGGTGCAATCACTTCCTCTTGATCACTATTAAATTAGCCGTGCTTTTCAAGACCGCACATTATTATCACTGTTTTTGGAGTTGTCACAGAATTACAGGACAGTGACATTCCCGAGTGTACTGGTGTTATGATTGGGCTTAGCTTTGATTACCAAGATGGTTACTGCATTAATCTTAGTCTTGCCCGTCTCTGTATCTGACTCTTATTTATGAATCTGGATTAATAAAACTGGATTATTCAAGCTTTGTTTCTTGCCAATCAATTGTCGCAAATACCTTATTAGCTGTAAATGTAAG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003544 True 2361 mRNA 0.47 14 9075890 9106765
TU1701 False 1107 lncRNA 0.40 2 9100618 9106764

Neighbor

gene id symbol gene type direction distance location
AMCG00003540 NA coding upstream 93869 8979600 ~ 8982021 (+)
AMCG00003539 cpsf3 coding upstream 98047 8965711 ~ 8977843 (+)
AMCG00003542 itgb1bp1 coding upstream 116356 8958141 ~ 8959534 (+)
AMCG00003535 NA coding upstream 233471 8819412 ~ 8842419 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 738240 8317038 ~ 8337650 (+)
AMCG00003545 grhl1 coding downstream 3076 9109841 ~ 9131160 (+)
AMCG00003543 NA coding downstream 33779 9140544 ~ 9144958 (+)
AMCG00003546 rrm2,LOC107668265 coding downstream 58921 9165686 ~ 9168941 (+)
AMCG00003547 NA coding downstream 65973 9172738 ~ 9179761 (+)
AMCG00003557 NA coding downstream 404799 9511564 ~ 9519396 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 48258 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 231808 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 375336 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 408963 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 631866 8443740 ~ 8444024 (+)
G1574 NA non-coding downstream 593792 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1130091 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1324899 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1943386 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 2121194 11227959 ~ 11228275 (+)
AMCG00003541 asap2,LOC106566627 other upstream 134139 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 423420 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1571875 7498040 ~ 7504015 (+)
G1012 NA other upstream 2580985 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 3741138 5303450 ~ 5334752 (+)
AMCG00003551 NA other downstream 149063 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 670743 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2354898 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 2383420 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 2466966 11573731 ~ 11577329 (+)

Expression


Co-expression Network