AMCG00003557


Basic Information

Item Value
gene id AMCG00003557
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9511564 ~ 9519396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003557
ATGGAGTTGGAAGGAGCTACTCGTCCCAGTGCGGACAACTCTGCGCACATTAAGACACCTGTATGGCAAGATAAGAAGGGGATATTGTACGAGGCAACACTCTTGTGGCTGGGATTGAACGtgcttctgtttgtgttggCTTTCCTCTCCTACACCAGAGACGAGGCCTACACTTACACCCGTGCCATGCTGGGATCTGGCTTGTCGTGGGCTCGAGCTTCTGCAGCCGGTGCCAATTTGAACTGCATGGCGGTTCTGCTACCCGTCAGTCGCAACCTTATCTCCTTCCTGCGAGGCTCCTGCGCTTGCCAGAAGAGAGCCCTCAGAAAGCAGCTGGACAAGAACATTACCTTCCACCGTATAGTTGCCTACCTGATAGTGGTGCATTCAATCATCCACATTGTAGCACATCTATCGAACATTGAGAGGTATCATGAAAGTCAGTCACTGGAAGCCGGAGATCTGCTGCTGAAACTCTCTAGTCTTGGGGAGAAGTGCAACGAGACGTACCTGAACCCAGTACGGACTTACAATACGACTCCTATGAAAGAAGTCTTGATTAATATATCCGGAATTTCTGGATTGGTGATTGCGGTTGTTCTAGTCCTGATGGTGACCTCATCAACGGAGTCTGTTCGACGATCATCTTACGAGGTTTTCTGGCTAACCCACcacttttttgttgtgttttttattggacTAATCATCCATGGCACTGGGAGGATTGTCCGAGGGCAGACCCCACAGAGCCTATCAGACCACAACGTGTCTTACTGCAAGCATCACGTGGATGAATGGGGAAATTCATGGAAGTGGGTTGTCGGTCCCTTGTTCATCTTCGTCTGTGAAAGAATTGTGCGTTACTATCGATCCTTGCAGCCCGTGGTTCTAACTAAAGTGGTAACCCATCCTTCAAACGTCCTCGAACTGCAGATGAAAAAGAAGAGTTTTAAGATGCAATCGGGACAGTACATCTTTCTTCAGTGTCCCATGATATCACCTCTAGAATGGCACCCCTTCACCCTGACGTCAGCGCCGGAGGAGGACTATTTGAGTGTCCACGTACGCATAGTGGGAGACTGGACCGCCGCCCTGCATGCCGCCTTTGTGGATCCGAGAAGAGATCCTGGGGTATCTGCCTACTTGACTCAACTGGCAGTGGATGGTCCATTTGGCTCTGCCAGTAGTGATGTGTTCCAGTATCGCATCAGCGTGTGCATTGGCACTGGGATAGGAGTGACTCCTTTTGTCTCGGTTTTGAAATCACTGTGGCACAAATCCTACCTGCTGTTCTCCCTGGAGACCCAGATGACAGGGAAAGACGATCTCCTGAGCTTTCACATCTTCCTCACGGGATGGGATGAGGTTCAGGCTCGGCACATATCGCTGCACTGCGGAGAACAGAGAGATGTCATCACAGGCTGCAGGGAGAAGACCTTCTATGGCCGGCCAAACTGGGACCAGGAGTTCAGCAATATTGCGGCTGCCCATCCCTGTGGAAATATCGGAGTGTTCTTCTGTGGCCCCAAGCCCCTCTCCAAGGTCCTTCACAGGATGTGCAACCTCCACTCTTCCCCTGACCCCCGGGGGGTACACTTCTACTTCAACAAGGAGAGCTACTAA

Function

GO: NA

KEGG:

id description
K21422 NOX3, MOX2; NADPH oxidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003557 True 1623 mRNA 0.51 13 9511564 9519396

Neighbor

gene id symbol gene type direction distance location
AMCG00003547 NA coding upstream 331803 9172738 ~ 9179761 (+)
AMCG00003546 rrm2,LOC107668265 coding upstream 342623 9165686 ~ 9168941 (+)
AMCG00003543 NA coding upstream 366606 9140544 ~ 9144958 (+)
AMCG00003545 grhl1 coding upstream 380404 9109841 ~ 9131160 (+)
AMCG00003540 NA coding upstream 529543 8979600 ~ 8982021 (+)
AMCG00003556 tfb1m,LOC106610789 coding downstream 1999 9521395 ~ 9524445 (+)
AMCG00003558 NA coding downstream 18919 9538315 ~ 9540081 (+)
AMCG00003562 NA coding downstream 241464 9760860 ~ 9774097 (+)
AMCG00003569 prkd3,LOC101070414,LOC105015789 coding downstream 301531 9820927 ~ 9853672 (+)
AMCG00003568 LOC104960473 coding downstream 346704 9866100 ~ 9875843 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 483932 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 667482 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 811010 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 844637 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 1067540 8443740 ~ 8444024 (+)
G1574 NA non-coding downstream 181161 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 717460 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 912268 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1530755 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 1708563 11227959 ~ 11228275 (+)
AMCG00003551 NA other upstream 248096 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 404799 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 569813 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 859094 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 2007549 7498040 ~ 7504015 (+)
AMCG00003570 NA other downstream 258112 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 1942267 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1970789 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 2054335 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 2205687 11725083 ~ 11729991 (+)

Expression


Co-expression Network