AMCG00003568 (LOC104960473)


Basic Information

Item Value
gene id AMCG00003568
gene name LOC104960473
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9866100 ~ 9875843 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003568
CGTGTTGCGCCGCAGGTCCCCATGCTGGAAGCAGCATGGCTCGCAAACGGCAGCATAAGTTGGACAAGTTTAAAGTCGATCTggaggaagaaaatgaaaatgaaggagACAAGGCTGATGGAGAACCGGAGGCACAAGACGAACCTTCATCCGCAGACGATGAGTTTTCTCTGGATGATGTTTTGCGCTTGGGAGGGACTCGGGCGGACTATGTTATGCTTGCAGCTGTGGAGGAATCTGCAGAGCTCATAGATGGTGGCAAGAAAGGTGCTATTGATGACCTGAAGGAAGGAGAGCTGCAGGCCTTTATCAACAAACTTGGGATCCGCTCCTACGCAGAGCACTTCTTCATAGAGAAGGACGAGCCCACACCGCCCGAGAAGAAGGAACCCAGTGTAAAATCAAAGGAAGCAAAAGCAGATAAGAAATTAAAGGAGCAGGGGAGTGAtggtaagaaaaaaacaaaccagtttAAAGACGCCCCCAGCGCTGAGGGCACAGGGAAGAAGGCCAAGCAGAAGGCCAACGTGTTTGAGTTCCAGCCGCGGGAGCTGCTGCTGATCAAGCCGGGCGGCAAGTGGTTTGACCTGGAGTACACTAAGGAACACACTTCCCAACTGCAGGATGACACACTGGTCTCCAAGTACCGAGCTCTGGCTCAGCAGCTGTACGAAGCGGAGACTGACTTGTACAGGAGCAAGAAGAACATCCAGAAAGGAGCCAACTCTGCCTGGATGAAGACCGTGGTGTCCACAGGCACACTGGCCGATCGGATGGCGGCCATGACCCTGCTGATCCAGGACGCGCCCGTGCACACTCTGCCGTTCTTGGAGACCCTGGTGGGCCACATCAAGAAGAAGGGCAGTCGGAGACAGAGCTTGATGGCTTTGGACACTTTCAGGGAACTCCTGATCTCTGACCTGCTCCCGGAGAACCGCAAGCTGAAGACGTTTTCCCAGCACCCCTTTGACAGGATCGAGGAGCTCTCCAGTGGCAACCGTGATGCCAGGGACCGCCGCCTGATCCTCTGGTACTTTGAGCACAACCTCAGGCACCAGGTGGCTGAGTTCGTGGTGGCCCTGGAAGCTCTGGCCCACGACACAGTGGTGACTACCAAATCCCGGGCCTTGACCACGGCACACGAGCTCCTGTGTTGCAGGCCTGAGCAGGAGAAGGCCTTGCTCATGCAGGTGGTCAACAAACTGGGTGATCCCCAGTACAAAATGGCAGCCAAGGCCTCCTACCTCTTGGAGACGCTGCTCCACCAGCACCCCAACATGAAGACGATTGTGTGCAGCGAGGTGGAGAGGCTCATGTTCAGGCCCAACATCAGCCCCAAGGCACAGTATTACTCCGTCTGCTTCCTCAACCAGGTCTTGCTGAGCCACGATGAGAGCGACCTGGCCAGCAAGCTCATCACCATCTACTTCTCCTTCTTCCGGGCCTGTGTCAAGAAGAAGGACGTTGAGAGTAAGATGCTCAGTGCCCTGCTGTCCGGCGTCAACCGGGCCTACCCCTACGCCAATGCGGGCGACGAGAAGATAAAGGAGCAGATGGACACTCTCTTCAAAGTGGTGCATCTGGTGAAGTTTAACACGGCAGTCCAGGCCTTGATGCTTCTGTTTCAAGTGATGGATTCCCAGCAGACTGTCTCTGACCGCTACTATGTTGCGCTCTATAAgaAGCTCCTGGATCCTGGCCTGTCGCAATGCTCGAAGCAGTCCATGTTCCTGAACCTGCTGTACAAGTCCCTGAAGGCAGACATCGTGCTCCGGAGGGTCAAGGCCTTTGTGAAGAGGCTGCTGCAGGCCAGTAGTGAGCAGAACCCCACCTTCATCTGCGGAGCCCTGTTCCTCGTGTCTGAGGTCATGAAGGCCAAACCAGGCCTTCGAGTCCTGCTGCAGGAGAATGGGGAAGGTGAAGAAGAGACTTTTGCAGACCTAGACGACGATGACGAAGAGGAAAGGTTTGTGGATGCAGATGAGGAAGATCAAGGCCAGAAACTATCCAAGGAGGAAGAGCAAGGCCAGAAACAGACCAAGAAAGCAGAGCAGGCTGCACAGTCCAAGCCAGCTGCATCTTGGGTCCACCAGCAGAACCTGGAAGGTGGAAAGAACATGGGAAGCTATGATCCCATGCACAGAAATCCTGCATTCTGTCGGGCTGACAACACCAGTCTTTGGGAACTTTCAATGCTTGCATCGCATTTCCACCCTTCTGTGGCCTTTTTTGCCAGAACCATCCTGCAGgGTGATTTTATCCAGTACACTGGCGATCCACTCCAGGACTTCACCCTCATCCGGTTCTTGGATCGCTTTGTCTTCAGAAACCCAAAGCAGCACAAGGGAAAAGAGAACACGGACAGTGTGGTCATGCAGCCCAAACAGAAACTGTCCATGGATAATGTCCGCAGTTTGCCTGTGAACTGTCGGGAGTTTCTTGAAAAAGACGAGAGTCAGATTCCAGTGGATGAAGTGTTTTTCCATCGGTTTTTCAAGAAACGGGAGTCGGAGAAACAGCGCAGGACCCGTGGGGGCGGAGATGACGAAAGCGTTGAGGACGTAGATGACGAGGAGTTTGAGAATGCCCTTGATGCATTTGAAGGAGATAACTTCTTCTCGAAATCTGAGGAAGAGTGTCTGGATTTTGCTGGCAATGTGAAGAGCAAGACTAAGGGGAAGAAGGGCGCAGAGGACTCGGACTCCGACTCGGACATGGAGGAGGGCGATTTGGATGACGAGGAGGTGTCTCTGGGCAGTATGGACGAGGAAGACTTTGGGGATGAGCTGGAGGAAGAAGGTGGAGCGTTCATGGACTTGGGAGAAGACAACGATGACGACAGTGCAGTCCAAGAAAATGATGAGATTAATATTCTTGAGGATTCGGGAGACGAATTTGCGGAATCTCCACAGATTCGTGCCGTTCCCAAGAAAGGCAAGAGGAAGCAATCGGAAGAGCTTGACTTCTCGGGGTCTTTAGGGTCAAAATTGGGACCCAAAAAGAAGAAAGGGTTAAAGGATGGAAAGATGTTTGCTGCAGCAGAAGAGTTTGGATATCTGCTGGATGAAAATGCAGGATCGAAGTTTGACAATATTGGCATCAATGCAATGGCAAACAAAGATAAAGCAGGAATCAAGCAGCTCAAGTGGGAGGCGGCCCGAGACGAATGGATCCGAGGCCGAGACGTCAAAACTCTCAGGAAGAAGAAGGCGATTTTCAAGAATAAGAAACGGCTCTACACATCTTTACTTGACCAGGCCTCTCTGTCCTTTTCTCGAATTCCATAAATCCCTGACCATTCATTGGATTTGTAATAAACTGCAAGGATTAACAATACAAGTGAACTGTCACAAGCAACGAAACCTTTCGATTTTTATCTTTAATGTCCTCGAACCAAGTAAATTCTGGGTTTGATTCCCAGTTTAGTGGAGTGTTGCAGAAGTAGAGATTTACTTTCAGGTCATACCTTTAATTgagaattgttttaaaacaatgtattgtctAAGCTACAGTTCCACTGCAACTGTTATGTGGTTTCACATTATGCTGCTATATAATGTAAAAGCAGTTTACCTACCAGCAGGGATTTACTAAGTGAATTCAAACAAACTGTGGCAGTTGTCCAAGTTAAAACAATAGAGTGGTCTTGACAGTATTAAGTTTGTCTAATTTTGTTCATTGGTGTGTTTAAATTCTATGGTAGCATCTTTCCTTATTCCCATTATGAATTAATTCAGCTTTGTATGATGTAATACACCTTAAGAGAAGCAATGTACGATTCCACAGCAGCTGCAGTTTTGTGCTAAAATCAAATCCCTGATGGTAAGATGTAATCAGTGCTATGactaaatattatattaagaaatgtaattgaaagtttccaaactatttaaatgtagcCTGTTTGTGTTAGTTTAGAAAGAG

Function

NR:

description
PREDICTED: CCAAT/enhancer-binding protein zeta-like

GO: NA

KEGG:

id description
K14832 MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003568 True 3924 mRNA 0.50 18 9866100 9875843

Neighbor

gene id symbol gene type direction distance location
AMCG00003569 prkd3,LOC101070414,LOC105015789 coding upstream 12428 9820927 ~ 9853672 (+)
AMCG00003562 NA coding upstream 92003 9760860 ~ 9774097 (+)
AMCG00003558 NA coding upstream 326019 9538315 ~ 9540081 (+)
AMCG00003556 tfb1m,LOC106610789 coding upstream 341655 9521395 ~ 9524445 (+)
AMCG00003557 NA coding upstream 346704 9511564 ~ 9519396 (+)
AMCG00003571 foxa2,LOC105909438 coding downstream 16935 9892778 ~ 9894988 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding downstream 303499 10179342 ~ 10181960 (+)
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding downstream 354278 10230121 ~ 10231671 (+)
AMCG00003580 NA coding downstream 599994 10475837 ~ 10495920 (+)
AMCG00003581 ralgapa2 coding downstream 630715 10506558 ~ 10532085 (+)
G1574 NA non-coding upstream 162622 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 838468 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1022018 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 1165546 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 1199173 8661032 ~ 8666927 (+)
G1706 NA non-coding downstream 361013 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 555821 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1174308 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 1352116 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 1455196 11331039 ~ 11403029 (+)
AMCG00003570 NA other upstream 84344 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 602632 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 759335 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 924349 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1213630 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 1585820 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1614342 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1697888 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1849240 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 3026723 12902566 ~ 12917002 (+)

Expression


Co-expression Network