AMCG00003569 (prkd3,LOC101070414,LOC105015789)


Basic Information

Item Value
gene id AMCG00003569
gene name prkd3,LOC101070414,LOC105015789
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9820927 ~ 9853672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003569
AGTTCCCAGAGTGCGGCTTCTTTGGCATGTACGACAAAATCTTACTCTTTCGCCATGACCTGAACTCGGAAAACATCCTGCAGCGGCTGACGTCAGTGGAGGATATCCACGAGGGAGATCTGATCGAAGTGGTTCTCTCTGCCCTAGCTACGGTAGAAGATTTCCAGATCCGGCCACATGCTCTCTACGTGCATTCGTACAAAGCCCCTACCTTCTGTGATTACTGCGGGGAGATGCTCTGGGGCCTCGTCCGACAAGGCCTGAAATGTGAAGGATGTGGTCTGAACTATCACAAGcgctgtgcatttaaaataccaAACAACTGCAGTGGCGTGAGGAAGAGGCGTCTGTCCAATGTCTCTTTGCCTGGGCCGGGGCTATCAGTCCCCAGGCCTGCGCCGATCGAGCATGCCACCGTGTCCACAGAAGAGCAGCGCTCTCACCAAGAGGCTGGCAAACGGATTCCCTCCTGGAGCGGGCGTCCCATCTGGATGGAGAAGATGGTTCTGGGTCGGGTGAAGGTGCCTCACACCTTTGTGGTCCACTCCTACACACGCCCCACCATCTGTCAGTACTGCAAGCGTCTGCTCAAGGGCCTGTTCCGTCAGGGCATGCAGTGTAAAGACTGTAAGTTCAATTGTCACAAGCGGTGTGCCTCCAAAGTTCCCCGAGACTGTCTTGGAgaagttgtttttaatggagGCAAGTACATGTAACCCGCCAGTCCTGGGCCCGACTCGGACATCACCATGGAGGTGGACAGCAGTGACATCCACAGTGACGGCAGTCGAGGCCTGGATGACTCGGAGGAGCCTTCTACCCCCGAGGATAAGATCTTCTTCATGGACTCCCCAGACCTGGACGGAGAGAAGGATGAGGAAGCAATCAAAACCATCAGTCCTTCCACAAGCAGCAACATCCCTCTGATGCGAGTGGTGCAGTCCATCAAGCACACAAAGCGGAAGAGCAGCACCATGGTGCGGGAGGGCTGGATGGTACACTACACCAGCAGAGACAACCTGAGAAAGAGACATTACTGGAGACTGGACAGCAAGTGCCTTACGCTTTTTCAGAATGACACTGGAGCCAAGTATTACAAGGAAATCCCCCTCTCCGAAATCCTCCAAGTGGACCCAGCTCGTGATTTTACCATCCTGGCCCAGGGCAGCAACCCTCATTGCTTCGAGATCATCACGGACACCATGGTGTACTATGTGGGGGAAAACAACGGAGGGAACTACCAGAACCCAGTGCTAGCTGCCTCCGGAGTGGGCTTTGAGGTGGCTCAGAGCTGGGAGAAAGCGATCCGACAGGCCCTTATGCCAGTAACACCTCAGGCCAGTGTGTGCACTGTAGGAGGACAAGGCAAAGACCACAAAGAGCTGTCCATCAGCATATCTGTTTCCAACTGTCAGATTCAGGAAAATGTGGATATAAGCTCGGTATACCAGATTTTTGCTGACGAGGTATTGGGATCAGGACAGTTTGGAATCGTTTATGGCGgcaaacacaggaaaacaggaagagatgtggcCATTAAAGTCATTGACAAAATGAGGTTTCCCACCAAGCAAGAGAGTCAGCTGAGAAACGAAGTTGCCATTTTACAGAACCTGCACCATCCCGGGATAGTGAACTTGGAGTGCATGTTTGAAACTCCCGAGAGGGTTTTTGTTGTCATGGAGAAGCTGCATGGCGACATGCTGGAGATGATTCTGTCCAGCGAGAAGAGCCGGCTGCCGGAACGCATCACTAAGTTTCTTGTTACGCAGATTCTGGTGGCTTtaagacatttgcatttcaagaACATAGTACACTGTGACCTGAAGCCTGAGAACGTTCTCCTAGCATCAGCAGAGCCATTTCCTCAGGTGAAGCTGTGTGACTTCGGCTTCGCCCGCATCATTGGGGAGAAATCGTTCCGGCGCTCTGTGGTGGGGACCCCGGCCTACCTGGCCCCTGAGGTCCTGAGGAGTAAAGGGTACAACCGCTCCTTAGACATGTGGTCCGTGGGAGTCATCATCTACGTGAGCCTCAGCGGCACGTTCCCCTTCAACGAGGACGAAGACATCAATGACCAGATTCAGAACGCAGCCTTCATGTATCCGCCCAACCCCTGGAGAGAGATATCTGGCGAAGCCACTGATCTAATCAACAATCTCCTTCAAGTGAAAATGAGAAAGCGGTACAGTGTGGACAAGTCTCTCAGCCACCCGTGGCTCCAGGACTACCAGACGTGGCTGGACCTCAGGGAGTTCGAGACGCGGATCGGGGAGCGCTACATCACCCACGAGAGTGACGACGCGCGCTGGGAGGAGTACGCCGACGCGCACAACCTGGCTTATCCAAAACATTTCATCATGGCGCCCAACCTGGACGACATGGAGGAGGATCCGTAGCGGCGCCATGGCCTGGATGGAGGACTTGTAGAGGCAGACTGCCTGCCAGTTAAGAGACCTGGGAACTGTTCACGAGACCCGAGATGATCTGGCACGGCTCGTCGTCGGACTCTGGTGGAGCAGTCCGGGGAGACGGAACATGGGAGATGTGTGGGGGTGTGGACTGTAGAGGTCCGCTGTGTGAAATGGCAGACTGTGCCTTGAAGGTGCGTTTTGTGGTGTTTAACCGAGGTGTATGTGAAGCCTAGAGGTGACGTGGACTTCAGGTTTTTATAGTTTGAAATATTCCTGATTTATGATGAGAATCTCTttttatagcttttttttttttttttttttaacctt

Function

symbol description
prkd3 Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Predicted to be involved in protein kinase D signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD3 (protein kinase D3).

NR:

description
PREDICTED: serine/threonine-protein kinase D3-like

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003569 True 2744 mRNA 0.53 17 9820927 9853672

Neighbor

gene id symbol gene type direction distance location
AMCG00003562 NA coding upstream 46830 9760860 ~ 9774097 (+)
AMCG00003558 NA coding upstream 280846 9538315 ~ 9540081 (+)
AMCG00003556 tfb1m,LOC106610789 coding upstream 296482 9521395 ~ 9524445 (+)
AMCG00003557 NA coding upstream 301531 9511564 ~ 9519396 (+)
AMCG00003547 NA coding upstream 641166 9172738 ~ 9179761 (+)
AMCG00003568 LOC104960473 coding downstream 12428 9866100 ~ 9875843 (+)
AMCG00003571 foxa2,LOC105909438 coding downstream 39106 9892778 ~ 9894988 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding downstream 325670 10179342 ~ 10181960 (+)
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding downstream 376449 10230121 ~ 10231671 (+)
AMCG00003580 NA coding downstream 622165 10475837 ~ 10495920 (+)
G1574 NA non-coding upstream 117449 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 793295 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 976845 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 1120373 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 1154000 8661032 ~ 8666927 (+)
G1706 NA non-coding downstream 383184 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 577992 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1196479 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 1374287 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 1477367 11331039 ~ 11403029 (+)
AMCG00003570 NA other upstream 39171 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 557459 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 714162 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 879176 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1168457 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 1607991 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1636513 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1720059 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1871411 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 3048894 12902566 ~ 12917002 (+)

Expression


Co-expression Network