AMCG00003541 (asap2,LOC106566627)


Basic Information

Item Value
gene id AMCG00003541
gene name asap2,LOC106566627
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8900456 ~ 8941751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003541
ATGATCTTATTCTTTTCCATGAGAGGAAAGGGCCTTTCTACTCAGGCTCACAAAGCTCTGGACGTGGACCGGAGTGTCCTGTACAAGATGAAGAAGTCAGTGAAGGCCATTTACACTTCAGGTCTGGcGCACGTGGAGAACGAGGAGCAATACACCCAGGCTCTGGAAAAATTTGGCGAGAACTGTGTCTACCGAGATGACCCAGATTTGGGATCAGCCTTCCTCAAGTTCTCGGTGTTCACGAAAGAGCTGACCGCACTCTTCAAAAACTTGtttcagaataTGAACAATATCATCACCTTTCCACTTGATAGTCTTTTGAAAGGCGACTTGAAAGGTGTAAAAGGCGATCTGAAAAAGCCTTTTGACAAGGCCTGGAAAGACTATGAAACCAAAGTtACGAAGAttgagaaggagaagaaggagcaTGCGCGACAGCACGGAATGATACGCACGGAGATTAGCGGAGCGGAGATTGCGGAGGAGATGGAAAAAGAGAGACGTTTTTTTCAGTTGCAGATGTGTGAGtaTCTCCTCAAAGTTAACGAGATCAAAATCAAGAAGGGTGTGGACTTGCTCCAGAACCTCATTAAGTATTTCCATGCCCAGTGCAATTTCTTTCAGGATGGGCTGAAGGCAGTGGAGAACCTTAAACCCTCAATCGAAAAGCTAGCTACAGATTTGCACACGATAAAGCAGGCCCAGGATGAGGAGAGGAAGCAGCTCACCCAGTTGAGAGATGTGTTGAAGTCTTCACTGCAGGTGGAACAGAAGGAGGATTCTCAGGTGCGTCAGAGCACTGCCTACAGTCTGCACCAGCCCCAGGGGAACAAGGAGCACGGCACGGAGCGCAGCGGGAATCTGTACAAGAAGAGTGACGGGTGGGTGTCCCGACTAAGATTGCTCAGAAAGGTGTGGCAGAAGAGAAAATGCTCAGTGAAAAACGGATATCTTACTATATCTCATGGAACGGCTAACAGACCACCAGCAAAGCTCAATCTATTAACCTGTCAAGTGAAACGCAACCCAGATGAGAAAAAAAGCTTTGATCTCATATCACATGACAGGACCTATCACTTTCAAGCAGAAGATGAACCTGAATGTCAAATATGGATTTCGGTCCTCCAGAACAGTAAGGAGGAGGCTCTGAACAACGCCTTCAAGGGGGACCAACATGTGGGAGAGAACAACATCGTCCAGGAGCTGACCAAAGCCATTTTGTCCGAAGTGAAGAGGATGACTGGGAACGATGTGTGCTGTGACTGCGGGGCACAGAATCCCACGTGGCTGTCCACCAATCTTGGAATCGTGACGTGTATCGAATGCTCTGGAATCCACAGAGAACTCGGCGTGCACTACTCCCGAATACAGTCCCTCACCCTGGATGTCTTGGGAACATCTGAGCTCTTGCTGGCCAAGAACGTCGGGAACGCTGGCTTCAATGAGATCATGGAAGCCAATCTGTGTGCAGAGGACCTGGTCAAACCTAACCCCACCAGCGACATGCAGGCACGAAAGGACTACATCACAGCCAAGTACACCGAGAGGAAATTTGCTAGGAAGAAGTGCATCGACAATGCCGCCAAGCTGCAGAGTCTGTGTGAAGCCGTGAAGGCCAGGGATATCTTCTCTCTGATTCAAGTGTATGCAGACGGTGTGGATCTGATGGAGCCCATTCCACTGGCAAACGGACACgagcagggcgAGACCGCACTTCACCTGGCCGTCCGACTGGTGGACCGGACTCAAAGCTGCTCTTGCTCACCACAGCCTGGACGTTTGTTTCACAGTGGCAATCTGGATAAGCAGACCACGAAAGGCAGCACTGCCCTGCACTACTGCTGCCTAACGGACAACGTGGAGTGCCTCAAACTGCTGCTGAGAGGGAAGGCGTCCATTGACATTGCCAACGAATCGGGAGAGACCCCTCTTGACATCGCCAAAAGACTAAAGCACACGCAGTGTGAGGAGCTGCTCAGTCAGGCGTTGTCTGGGAAGTTCAACGCTCACGTCCACGTGGAATATGAGTGGAGGTTACACCACGAGGATCTGGATGAGAGCGACGAAGACATGGAGGAGAAGGTGAGTGTGTCCCACTGTGCTTGTGTCACTCAGGAAAAGTGA
>TU1625
ACAGTGGCAATCTGGATAAGCAGACCACGAAAGGCAGCACTGCCCTGCACTACTGCTGCCTAACGGACAACGTGGAGTGCCTCAAACTGCTGCTGAGAGGGAAGGCGTCCATTGACATTGCCAACGAATCGGGAGAGACCCCTCTTGACATCGCCAAAAGACTAAAGCACACGCAGTGTGAGGAGCTGCTCAGTCAGGCGTTGTCTGGGAAGTTCAACGCTCACGTCCACGTGGAATATGAGTGGAGGTTACACCACGAGGATCTGGATGAGAGCGACGAAGACATGGAGGAGAAGGTGAGTGTGTCCCACTGTGCTTGTGTCACTCAGGAAAAGTGAGTTAAGCTGGTCCTCAAGGCCAGACCCcgattatttcaattattttgtcttcCTTTGGGGATCCAAAGACCAT

Function

symbol description
asap2 Predicted to enable GTPase activator activity. Predicted to be involved in positive regulation of GTPase activity. Predicted to be located in Golgi cisterna membrane and plasma membrane.

NR:

description
PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X4

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003541 True 2124 mRNA 0.50 21 8900456 8941678
TU1625 False 411 lncRNA 0.40 3 8940151 8941751

Neighbor

gene id symbol gene type direction distance location
AMCG00003535 NA coding upstream 58037 8819412 ~ 8842419 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 562806 8317038 ~ 8337650 (+)
AMCG00003532 rsad2 coding upstream 608238 8284827 ~ 8292218 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 920259 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 1352902 7532553 ~ 7547554 (+)
AMCG00003542 itgb1bp1 coding downstream 16390 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 23960 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 37849 8979600 ~ 8982021 (+)
AMCG00003545 grhl1 coding downstream 168090 9109841 ~ 9131160 (+)
AMCG00003543 NA coding downstream 198793 9140544 ~ 9144958 (+)
G1375 NA non-coding upstream 56374 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 199902 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 233529 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 456432 8443740 ~ 8444024 (+)
G1291 NA non-coding upstream 559864 8340266 ~ 8340592 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding downstream 67546 9009297 ~ 9027632 (+)
G1574 NA non-coding downstream 758806 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1295105 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1489913 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 2108400 11050151 ~ 11050644 (+)
AMCG00003534 id2,LOC106566577 other upstream 247986 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1396441 7498040 ~ 7504015 (+)
G1012 NA other upstream 2405551 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 3565704 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 4378056 4514031 ~ 4522400 (+)
AMCG00003544 NA other downstream 134139 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 314077 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 835757 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2519912 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 2548434 11490185 ~ 11491597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017405 asap2b coding NC_007131.7 CM002904.2 29634653 ~ 29675458 (+)