AMCG00003545 (grhl1)


Basic Information

Item Value
gene id AMCG00003545
gene name grhl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9109841 ~ 9131160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003545
GCGAGAAAAGCCAACAAAACCCGTTCTTTCAGGGACAACTTTACCGTCGCCCTCATCCTGCTTCTCAAATTAGTTTTTCAAAGAAAGAGGCCGGATCGGATTTACCGTACGAACTAGAAAGTCCAGTTCGACCGACCGAGATGACACAAGAGCAGGACAGTAAGAGGGCAGTTCTGGTCCTGCAGAACGAGCCACCGTACAACCAGCGCCGGCACTTCACCAGCGAGGACGAGGCCTGGAAGTCATTCCTGGAAAACCCCTTGACCGCCGCCACCAAGGCCATGATGAGCATCAATGGGGACGAGGACAGTGCTGCCGCCCTAGGCCTGCTTTATGACTATTACAAGGTGCCACGAGATAAAAGAACAATTTCTCCAACGAAACCAGATCTTATTACCGCTGATGTCGATCCCAACAAAAGGAATGTCATGACTCAGTTGCAAGAACCCATGATGCCAGGCGCCGAGAACAGACTCCAGCTCCTCAAGGGAGTTCCCTTCAACATAGTCCTCCCTGGAAACCAGCTGTGCACGGACAAGAGAGGCCAGTTCCCGTCTCCTGACACCACCGTGACGGTGTCCATCGCCGCTGTGCCCAATTACCCGGTCAAGACGGAGGCTAATTCCCACAGTTTCACGGTGGGCGTCCCCTCGGCCCCCCACTGCTCCGACCCAGACAGCAGAATCGTCGTGTTTGACCAGCAGCTCAACCCCGACCAGTTCAGCCCCAACACCCAGTCCAGGACACCAGACTCCACTTTCACAGAGAGCTTCAAAGACGACCCTCCGGAGGTGTTCCCTTTCCCAGGGGATCTCCAATTGCGCATGGCCTCCATTTCCCCAGAGGATTACACGTTTGACGCAATCTCTGGTAACAATTTTGAATACACCCTTGAAGCGTCCAAGTCTCTGCGACAGAAGCCTGGTGATGGAACGATGACCTACCTGAACAAGGGTCAGTTCTACCCAGTCACACTCCGGGATATTGGAAACGGCAAAGTGCTGCAGCACCCCATCAGCAAAGTGCGGAGCGTTGTGATGGTGGTGTTTGGGGAGGAGAAGTGCAGAGACGATCAGCTGAAGCACTGGAAATATTGGCACTCCCGGCAGCACACAGCCAAACAGCGCTGCATTGACATTGCGGACTACAAAGAAAGCTTCAACACGATCAGCAACATTGAGGAGATCTCCTACAACGCAATCTCCTTCACCTGGGACATCAATGACGAGGCGAAGaTCTTCATCTCGGTGAACTGCCTGAGCACGGATTTCAGCTCCCAGAAGGGGGTCAAGGGGCTGCCCCTCAACCTGCAGATCGACACCTACAGCTACAATAACCGTAGCAACAAGCCCATCCACCGCGCATACTGCCAGATAAAGGTCTTCTGTGACAAGGGTGCCGAGCGTAAGATCCGCGATGAGGAGAGGAAGCAGTCCAGGAGGAAGGGCAAGTGCCAAGACATGGCCTCCAATATGGGCAACTATCCAGATGTCAAAGTGCCGGTGCTGCCCAAACGCACCGACATCACTACGTTCAAGCCATTGAATGAGTTTGATGCTCAGCCTGTTCTCTTCATCCCGGACATCCATTTCGCCAACTTTCAGCGCCATCAGTTTTCTTCAGAAGATGCGGAAGAAGGATCAGCCATGAAGAGATTACCTTTCACATCTGACGAGGAATATGGCTCCACTCCTAACAAAATCGCCAGGGTAGATGAACCCAAAAAAGTGTTGCTGTATGTGCGTAAAGAATCTGAGGAAGTTTTTGATGCACTGATGCTGAAGACCCCTTCAGTGAAAGGCCTTGTGGAGGCAatatCGGATAAATATGAGATTCCAGTAGACAAAGTTGCAAAAGTGTTCAAGAAGTGCAAAAAAGGGATCCTGGTTAACATGGACGACAACATTATCAAGCATTACTCGAATGAAGACacctttcaaattcaaatcgAGGAAATGGGCGGACACTATAAACTCACGCTAACGGAGATCTGAGAAATATCAGCATTTATGAAGAACTCCACCAGACAAGACTATCGAAGACAGACTTGTTCAACAGCAGGACTTACTTGCTGCTCCAGAGTGCCAACGGGATACGGGTTTACAGATTTccatttgtaaagaaaatattcaCCATctgtacatacacatttttctcTTGAAGTACACTACCATTACTTTAATAGGTAGAAGCTGGGCATTTGAAAATCGGATCCCTTGCTTTGTGAAGGAATCTAGTTTGTCATTGGTGTAGTACACGCATTAAAAGAACTGCTGTACACCCCCCTTATTGTCACAATGATGGTAATGCCAAATTGTAATGAGTTCCAGTTTGCGCTGTATGGGATTACAAAGTAAACAAAGGGCATCAGGGATcagtttctaaaatgtatttttttaatttattccaaaGGAGACCTGATCCACTTTCCATTTGTATGCGTCTTCCTCCTGCTGCAGTATCGTAACACTAAATCCAGTAAGATTCCTGCAATTTGTACGTCTTTAGGAAGAGACTGTAATTGGTCTGGGTTTATTTTGTTCCTTGGTGCTGTACACAAGTTCTAAGTATCTTTTATGGCTATCCTCTTTATACATCACTCAGTATTTGTATAAACTGTGCCTAGTGTTTCGGAGGAGACCCATTCTCTTATACCCATGAACAGGCATTTGACCGTGTAACACTGGAAacatcattttaaagtattatgtTTGAAACTAACTGAAAGCTGATTTCGTTATGCTAATTGGATACCTGTATCGTCGCTGTTGCCCTTCTACAAATTTCTCTGAATACTGAGATGGTCACTCACTCGGAGGTATCCAGGTTTAATCTGTATAGAAAgtgcaataaatatttaatatatacaaataacttTTATATTATGTTCCTCACCTTCTAAGGTAACCGGAAAAcctgatttaattttacaagcATTTACAAACCAGCCAAGTCTTGTATTGCAGATGTTGTGGATCTAACAAAGTGGCTAACTGGTTCAACTTTGTGTACAAAGTACTTgtgcatttgtatgtgtgtgtgtgtgtatatatatatatatatatattttagcattgAGAATCGGGGCATGGGTTTTGTATTGagttttttctgttatttttgacTAACATTTCTCTCTATccatatgtaaatgtttataccCAGGGAATGTTTTATACAAAGAGGGTGTTCatgttgtttgttggtttattttatatataatatatataacacttttttaaCCATGCATTCGTTCTTAAACTGTCAAATAAATGTCGGCTGATGCACTGTC

Function

symbol description
grhl1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

NR:

description
PREDICTED: grainyhead-like protein 1 homolog isoform X2

GO:

id name namespace
GO:0003334 keratinocyte development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003545 True 3292 mRNA 0.45 15 9109841 9131160

Neighbor

gene id symbol gene type direction distance location
AMCG00003540 NA coding upstream 127820 8979600 ~ 8982021 (+)
AMCG00003539 cpsf3 coding upstream 131998 8965711 ~ 8977843 (+)
AMCG00003542 itgb1bp1 coding upstream 150307 8958141 ~ 8959534 (+)
AMCG00003535 NA coding upstream 267422 8819412 ~ 8842419 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 772191 8317038 ~ 8337650 (+)
AMCG00003543 NA coding downstream 9384 9140544 ~ 9144958 (+)
AMCG00003546 rrm2,LOC107668265 coding downstream 34526 9165686 ~ 9168941 (+)
AMCG00003547 NA coding downstream 41578 9172738 ~ 9179761 (+)
AMCG00003557 NA coding downstream 380404 9511564 ~ 9519396 (+)
AMCG00003556 tfb1m,LOC106610789 coding downstream 390235 9521395 ~ 9524445 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 82209 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 265759 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 409287 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 442914 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 665817 8443740 ~ 8444024 (+)
G1574 NA non-coding downstream 569397 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1105696 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1300504 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1918991 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 2096799 11227959 ~ 11228275 (+)
AMCG00003544 NA other upstream 3076 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 168090 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 457371 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1605826 7498040 ~ 7504015 (+)
G1012 NA other upstream 2614936 6487692 ~ 6494905 (+)
AMCG00003551 NA other downstream 124668 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 646348 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2330503 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 2359025 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 2442571 11573731 ~ 11577329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_04121615_04144068 GRHL1 coding CI01000062 null 4121615 ~ 4145488 (+)