AMCG00003543


Basic Information

Item Value
gene id AMCG00003543
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9140544 ~ 9144958 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003543
CcgcactttgttttgttttttgccggGCCGTGCGCCGCGGAGGGGGAGCCCTGCTGGCGGAGGCGAGTGCAGCCCACAGTGCGCCGAGCGCTCGCGTCCACGCCGTCTTTGTTCCTCTCGGTGCCCGCAGACGCAGACGATGCAGACCTGTGCGCCGCGCCGCCGCTTCGACGTGGACCCGGCCAGCGGGGCCGAAATCATGGATATCTGCGAGTCCATCATGGAAAGGAAGCGCCATGACAGTGAGCAGTCGTCCTGCAGCACGCTGGAGCACAACGACCTGGAGGCAGTGGAAGCCCTGGTGTGCATGAGCTcgtggggtcagaggtcacacaGGCCAGAGCCCTGCAAAGCCCGGCCCCTGACCCCCGCCTCGGACTCCTGCGACTCCGTgctgcacacagacaccccCCTTGATGCGTCCAAGGACTTTGTTTCTTTCTCGTCACTGTGTATGACCCCACCTCACAGCCCCAGTTTTGCCGAGGCCTCCACTACCACTGCCCTGCTCACCCCTGTGTCAACGATGACTAGTCCAAGGCTGAAGACGGTCATGGCCAATTGGAGAGTCTGCTCGGGTGTGTCAGAGAGCTCTGGGCCTGGAAGTGGGAGGCCTGCGATGACTGGTGCCACAGAATCCCGGAGCCAGAAACCAGCCCAGGAccaaatgacatcacttccctGCAGAGCCATGGCAACTAGTGTGATTCGTCACACTGCCGACAGTTTCCCTTGCCAGCACATTCCTTCAGTGGTGACTGAGCAGCAGCAGGCGCAGACAAATACCACACACCACTCACAAAGGACTGAGCATACCACCAGCACAGCAGCCTCTGTGTTCGCTGCCATTTCCTTGGAGCCCGACTGCCGGGGCGGCACGTGCAGCCTGGTCACAAAGGACCAGCGTGCCCTGCTGTCTGCGGCCGCCACCACACCTCCTGCGCCCGTCACGTCAGAGACCGGTGCCACGGCTGCCCCCATGCCGAGCCCTCCTGTGCTCTGCCAAATGTTCCCAGTGAACAGACAGGCTGGGATGATCTCAGCCTTCATACAGACGCCTGTGCAGACTCAGACAGCCACAGTGAAGCCCATCTTACCCCAGACAACCAGCTTTTCACAGCCATTCCTCATGGGAGCCCCAGTTCCCCAGGGCACTGTTATGTTTGTCCTTCCCCAGTCCCCGGTATCACAGCCCTCCCAGTGCTCACAGACTGTAATGACCCTGGGCAACACCAAGCTGCTACCTCTGGCTCCCGCGCCAGTCTACGTGCCTTCTGGTCAGAGCGGTGTGTCACAGATGGACTTCTCCCGGAGACGAAACTATGTGTGCAACTTCCCAGGGTGTCGCAAGACTTACTTCAAGAGTTCACACCTCAAAGCACATCTCCGAACTCACACAGGTGAAAAGCCTTTCAGCTGCAACTGGGAGGGGTGCGACAAGAAGTTTGCGCGCTCGGATGAACTGTCCCGGCACCGCAGGACACACACGGGAGAGAAGAAGTTTGTGTGTCCCGTGTGCGACCGTCGCTTCATGCGCAGCGACCACCTGACCAAGCACGCCCGCCGTCACATGACtacaaaaaaaatccccacCTGGCAGGCCGAAGTGGGGAACCTGAACAAGATTGCGGCAGTGAAAACGCCGGCTCCAAACCCTGTTCTTCCGCTTGGCATGCTTGTACCCGCCTCCAAATAACCCTCCAACTCGAGCAGAAGTTCTGTCTCAGGAACAAAAtctcaaacacaaaaatgactgactaaataaataaacagctgctAAAAAGCTCATGGAACTCTGACCTTGCACTGGACTAGCTTGTTTGTACTTTttcaaaggatttttttttttctttgtttacttttgtatgagtaatgtttaaaaaaaaaaagaaaaaagtatgcACTCTTTTTTGCCAAAGCCTTTGTATGGtttctgtcattgttttgtctgtgtatgtctgttatgtgtatgtgtatatatgaatgtattgtatattctgaactgcatttatttactgaatattacaacaggaaaaaaaaaaaaagacaaaaaagtttGTTACAGATATGTTAAAGAAAATCTGTAAGTGAACAGTATTCTAGTGATGATTATGTACCATTTCactttacatatta

Function

GO: NA

KEGG:

id description
K09209 KLF10_11, TIEG; krueppel-like factor 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003543 True 2136 mRNA 0.54 4 9140544 9144958

Neighbor

gene id symbol gene type direction distance location
AMCG00003545 grhl1 coding upstream 9384 9109841 ~ 9131160 (+)
AMCG00003540 NA coding upstream 158523 8979600 ~ 8982021 (+)
AMCG00003539 cpsf3 coding upstream 162701 8965711 ~ 8977843 (+)
AMCG00003542 itgb1bp1 coding upstream 181010 8958141 ~ 8959534 (+)
AMCG00003535 NA coding upstream 298125 8819412 ~ 8842419 (+)
AMCG00003546 rrm2,LOC107668265 coding downstream 20728 9165686 ~ 9168941 (+)
AMCG00003547 NA coding downstream 27780 9172738 ~ 9179761 (+)
AMCG00003557 NA coding downstream 366606 9511564 ~ 9519396 (+)
AMCG00003556 tfb1m,LOC106610789 coding downstream 376437 9521395 ~ 9524445 (+)
AMCG00003558 NA coding downstream 393357 9538315 ~ 9540081 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 112912 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 296462 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 439990 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 473617 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 696520 8443740 ~ 8444024 (+)
G1574 NA non-coding downstream 555599 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1091898 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1286706 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1905193 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 2083001 11227959 ~ 11228275 (+)
AMCG00003544 NA other upstream 33779 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 198793 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 488074 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1636529 7498040 ~ 7504015 (+)
G1012 NA other upstream 2645639 6487692 ~ 6494905 (+)
AMCG00003551 NA other downstream 110870 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 632550 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2316705 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 2345227 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 2428773 11573731 ~ 11577329 (+)

Expression


Co-expression Network