AMCG00003546 (rrm2,LOC107668265)


Basic Information

Item Value
gene id AMCG00003546
gene name rrm2,LOC107668265
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9165686 ~ 9168941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003546
ATGATTTCCAGCCGCTCTCCCCTCTCTTCCAAGAAGGAAAACGTCATCGCCTCTACGATGAGCGAGCTTTCCTTCCTCGACAAGGAGAACACGCCTCCAAGTATGAACACTACACGCATCTTGGCATCCAAAACGGCAAGAAAAATATTCCAGGATGCAGAAACCGAGGCGAAACCTGTAGACGCGAGAAGAGACGTACAAGACGAGCCGCTGCTGAGAGACAATCCCCGCCGATTCGTCATCTTCCCCATCAAGTATCACGATATCTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACCGCGGAAGAGGTGGACCTCTCTAAAGACCTCAAACACTGGGAATCCCTGAAGGACGAGGAGCGCTACTTCATCTCCCACGTGTTGGCATTCTTTGCTGCAAGTGATGGCATTGTTAATGAGAATCTGgTGGAGCGCTTTAGCCAAGAGGTTCAAGTAACTGAAGCACGGTGCTTCTACGGTTTCCAAATTGCCATGGAAAACATCCACTCTGAAATGTACAGCCTGCTTATTGACACATACATCAAAGACTCAAAAGAGAGAGAGTACCTCTTCAATGCCATTGAAACCATGCCGTGTGTGAAGAGGAAGGCTGACTGGGCTCTGAACTGGATTGGAAACAAAAACGCACAATATGGCGAGCGCGTGGTGGCGTTTGCTGCAGTGGAAGGGATTTTCTTCTCTGGGTCGTTTGCCTCTATTTTCTGGCTGAAGAAGAGAGGTCTGATGCCAGGACTGACCTTCTCCAATGAGCTGATTAGCAGAGACGAGGGCCTGCACTGTGACTTTGCCTGCCTCATGTTCAAGCACTTGGTCAACAAACCCTCTGAAGAAAAAGTACGAGCAATCATCACAGATGCTGTCCAGATAGAACAGGAATTCCTCACAAAAGCCTTACCAGTGAACTTGATTGGCATGAACTGCCTGTTAATGAAACAATACATTGAGTTTGTGGCTGACCGACTGCTGCTGGAGCTGGGTTTCAGCAAGATTTACAAGGTTGAAAATCCATTTGACTTCATGGAGAACATTTCTCTGGAAGGAAAGACCAACTTCTTTGAGAAGCGGGTAGGAGAGTACCAGAGAATGGGTGTGATGTCCAGCCCGACAGACAACACATTCAGGCTGGATGCAGACTTCTGA

Function

symbol description
rrm2 Predicted to enable ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; proliferative region; and tail bud. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2).

NR:

description
PREDICTED: ribonucleoside-diphosphate reductase subunit M2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0005737 cytoplasm cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003546 True 1167 mRNA 0.49 10 9165686 9168941

Neighbor

gene id symbol gene type direction distance location
AMCG00003543 NA coding upstream 20728 9140544 ~ 9144958 (+)
AMCG00003545 grhl1 coding upstream 34526 9109841 ~ 9131160 (+)
AMCG00003540 NA coding upstream 183665 8979600 ~ 8982021 (+)
AMCG00003539 cpsf3 coding upstream 187843 8965711 ~ 8977843 (+)
AMCG00003542 itgb1bp1 coding upstream 206152 8958141 ~ 8959534 (+)
AMCG00003547 NA coding downstream 3797 9172738 ~ 9179761 (+)
AMCG00003557 NA coding downstream 342623 9511564 ~ 9519396 (+)
AMCG00003556 tfb1m,LOC106610789 coding downstream 352454 9521395 ~ 9524445 (+)
AMCG00003558 NA coding downstream 369374 9538315 ~ 9540081 (+)
AMCG00003562 NA coding downstream 591919 9760860 ~ 9774097 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 138054 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 321604 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 465132 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 498759 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 721662 8443740 ~ 8444024 (+)
G1574 NA non-coding downstream 531616 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1067915 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1262723 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 1881210 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 2059018 11227959 ~ 11228275 (+)
AMCG00003544 NA other upstream 58921 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 223935 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 513216 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1661671 7498040 ~ 7504015 (+)
G1012 NA other upstream 2670781 6487692 ~ 6494905 (+)
AMCG00003551 NA other downstream 86887 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 608567 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2292722 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 2321244 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 2404790 11573731 ~ 11577329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G466226 NA non-coding CI01000325 null 6986571 ~ 6990460 (+)