RNA id: TU1519


Basic Information

Item Value
RNA id TU1519
length 327
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1291
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8340266 ~ 8340592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGGAGTTGCGCCAAACAGTGCTTTGCATTGAGgcaaaaaaagttatactttTGTTTCATCAGACTACAAAAACaattgccacatggctacacagtctccttttgttttttgtttgttttttgcatacttcaaatgaGATTtaaggtgggctttcttgagtaatggcttccttcttgcaaCCGTACCACACAAGCCAGATTGGTGCACGGGATAGGGATACAATTTAACCTGAAACTAACCCAAATCCTAACATTAGCCATCTCTGTaatgttgttatttgtttgtttatctatttGTAGGgctttcagtaaataaataaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499 lncRNA upstream 63283 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 543412 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 589801 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 811808 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 841922 7498067 ~ 7498344 (+) False AMCG00003524
TU1531 lncRNA downstream 103148 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 320440 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 358874 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 503235 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 599559 8940151 ~ 8941751 (+) False AMCG00003541
AMCG00003533 mRNA upstream 2616 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 48048 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 360069 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 792712 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 809141 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003534 mRNA downstream 308565 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 478820 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 559864 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 617549 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 625119 8965711 ~ 8977843 (+) True AMCG00003539
TU1202 other upstream 1845361 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 308533 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 915236 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1436916 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3149593 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3233139 11573731 ~ 11577329 (+) True G1989

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2309435 True 658 lncRNA 0.41 1 NC_048590.1 29944887 ~ 29945544 (-)