Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00014689 |
| length | 855 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 5 |
| gene id | AMCG00014689 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 27179103 ~ 27189518 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K09331 | SHOX; short stature homeobox protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU89953 | lncRNA | downstream | 246466 | 26932268 ~ 26932637 (-) | True | G71961 |
| TU89858 | lncRNA | downstream | 844103 | 26334655 ~ 26335000 (-) | True | G71882 |
| TU89856 | lncRNA | downstream | 854849 | 26324038 ~ 26324254 (-) | True | G71880 |
| TU89855 | lncRNA | downstream | 897138 | 26281374 ~ 26281965 (-) | True | G71879 |
| TU89852 | lncRNA | downstream | 910696 | 26267867 ~ 26268407 (-) | True | G71876 |
| TU90016 | lncRNA | upstream | 95902 | 27285420 ~ 27304597 (-) | True | AMCG00014693 |
| TU90042 | lncRNA | upstream | 146177 | 27335695 ~ 27342750 (-) | False | AMCG00014692 |
| TU90058 | lncRNA | upstream | 229298 | 27418816 ~ 27419045 (-) | True | G72049 |
| TU90102 | lncRNA | upstream | 340778 | 27530296 ~ 27530643 (-) | True | G72089 |
| TU90167 | lncRNA | upstream | 646821 | 27836339 ~ 27837927 (-) | True | G72139 |
| AMCG00014688 | mRNA | downstream | 145084 | 26980121 ~ 27034019 (-) | True | AMCG00014688 |
| AMCG00014686 | mRNA | downstream | 274916 | 26902221 ~ 26904187 (-) | True | AMCG00014686 |
| AMCG00014679 | mRNA | downstream | 480478 | 26681180 ~ 26698625 (-) | True | AMCG00014679 |
| AMCG00014678 | mRNA | downstream | 533171 | 26643240 ~ 26645932 (-) | True | AMCG00014678 |
| AMCG00014672 | mRNA | downstream | 639541 | 26522096 ~ 26539562 (-) | True | AMCG00014672 |
| AMCG00014693 | mRNA | upstream | 108933 | 27298451 ~ 27304500 (-) | False | AMCG00014693 |
| AMCG00014692 | mRNA | upstream | 148180 | 27337698 ~ 27369527 (-) | True | AMCG00014692 |
| AMCG00014700 | mRNA | upstream | 183554 | 27373072 ~ 27377772 (-) | True | AMCG00014700 |
| AMCG00014699 | mRNA | upstream | 191668 | 27381186 ~ 27386627 (-) | True | AMCG00014699 |
| AMCG00014698 | mRNA | upstream | 207709 | 27397227 ~ 27404919 (-) | True | AMCG00014698 |
| TU87063 | other | downstream | 15516610 | 11660021 ~ 11662493 (-) | False | AMCG00014374 |
| TU86854 | other | downstream | 16380956 | 10796716 ~ 10798147 (-) | True | G69537 |
| TU86630 | other | downstream | 17861936 | 9310451 ~ 9317167 (-) | True | AMCG00014328 |
| TU86412 | other | downstream | 18794879 | 8383285 ~ 8384224 (-) | True | G69156 |
| TU86302 | other | downstream | 19020513 | 8156229 ~ 8158590 (-) | True | AMCG00014298 |
| TU90285 | other | upstream | 1140221 | 28329739 ~ 28332482 (-) | True | G72236 |
| TU90581 | other | upstream | 2199772 | 29389290 ~ 29398305 (-) | True | G72477 |
| TU91283 | other | upstream | 5073649 | 32263167 ~ 32263427 (-) | True | G73047 |
| TU91373 | other | upstream | 5407944 | 32597462 ~ 32614806 (-) | True | G73127 |
| TU91374 | other | upstream | 5407944 | 32597462 ~ 32619149 (-) | False | G73127 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00073389 | True | 1072 | mRNA | 0.51 | 5 | NC_007120.7 | 34641237 ~ 34647695 (+) |
| grasscarp (Ctenopharyngodon idella) | CI01000009_03466999_03473248.mRNA | True | 1146 | mRNA | 0.51 | 6 | CI01000009 | 3466853 ~ 3473414 (+) |
