RNA id: TU89856


Basic Information

Item Value
RNA id TU89856
length 217
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G71880
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26324038 ~ 26324254 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGTGTCTCCAGGACTGACAGATACAGCCACCACCGAGCCGGGCATGGGGGACCTCAGGATGCTGCTGGTGTCTTCTGGCACTTTCTCGGGCATATGCCTGCTCAGCGCCTCCGCCAGCTTGCTCAGCACCGTCACTTTATACTGACCGGGGAGaaggggaagggaaaaaaaaaaaaggaataaagaaaAGGTTTGTCTACCCTCATAGTATTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89855 lncRNA downstream 42073 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 55631 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 57822 26265731 ~ 26266216 (-) True G71875
TU89850 lncRNA downstream 80225 26243544 ~ 26243813 (-) True G71874
TU89849 lncRNA downstream 88423 26235411 ~ 26235615 (-) True G71873
TU89858 lncRNA upstream 10401 26334655 ~ 26335000 (-) True G71882
TU89953 lncRNA upstream 608014 26932268 ~ 26932637 (-) True G71961
TU90016 lncRNA upstream 961166 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 1011441 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 1094562 27418816 ~ 27419045 (-) True G72049
AMCG00014666 mRNA downstream 163750 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014662 mRNA downstream 288211 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014663 mRNA downstream 422344 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014658 mRNA downstream 472067 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014659 mRNA downstream 560119 25753848 ~ 25763919 (-) True AMCG00014659
AMCG00014675 mRNA upstream 11921 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014671 mRNA upstream 22246 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014673 mRNA upstream 79828 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014674 mRNA upstream 104427 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014672 mRNA upstream 197842 26522096 ~ 26539562 (-) True AMCG00014672
TU87063 other downstream 14661545 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15525891 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17006871 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17939814 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18165448 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 2005485 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3065036 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5938913 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6273208 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6273208 32597462 ~ 32619149 (-) False G73127

Expression Profile