RNA id: AMCG00014673


Basic Information

Item Value
RNA id AMCG00014673
length 2292
RNA type mRNA
GC content 0.49
exon number 20
gene id AMCG00014673
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26404082 ~ 26428529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATAGctcAAAGACAGATCCAATTACAGGGGCAGTGAAGAACACCAAGTACCATCAGCTCTATGATCTCTTTGGCTTGGTCACGTACCTGGACTGGGTGATGATAGTGGTGACTATCTGCTCCTGTATCTCCATGATGTTTGAGTCTCCCTTCACAAGAGTAATGCATGTCCCCACCTTACAGATCGCAGAATAcgtgtttgtcatttttatgaGCATTGAACTCAATCTCAAGATCATGGCTGATGGGCTGTTCTTCACACCGACGGCAGTCATCAGAGACTTCGGTGGAGTCATGGACATATTTATCTACTTAGTGAGTCTCATCTTCCTGTGTTGGTTGCCCGCAAATGTCCCCCCGGACTCCGGAGCCCAGCTGCTGATGATGTTACGCTGTCTGCGGCCGCTGCGGATCTTCAAGCTGGTGCCCCAGATGAGGAAGGTGGTGCGGGAACTCTTCAGCGGGTTCAAGGAGATCTTCCTGGTTTCTATCCTTCTGCTGACCTTAATGCTCGTCTTTGCAAGCTTTGGCGTTCAGCTGTTTGCTGGGAAACTTGCTAAGTGCAATGATCCGCACATCGAGAAGCGGaTCCATGGCATCTATatccatgtgtttgtgtttctcgGCTGTATGATTGGACTGACCCTTTTCGTTGGTGTGGTTATTGCtaatttcaatgaaaacaagGGAACAGCCTTACTCACTGTCGATCAGAGGAGATGGGAAGACCTGAAGAGCAGGCTGAAGATCGCTCAGCCCCTCCACCTCCCGCCACGCCCAGATAACGATGGCTTCCGCGCTAAGATGTACGATATCACTCAGCACCCGTTCTTCAAAAGGACCATTGCAGTGCTGGTGCTGGCCCAGTCCGTCCTGCTCTCGGTGAAGGTGACAATGAAATTGATTGCCATGTCGCCGGCTGGGTTTTGGCAGAGCAGAAGAAACCGTTACGACTTGCTCGTAACCTCCCTAGGAGTTATATGGGTCATCCTGCATTTTGCTTTACTGaatgAATATACCTACATGATGGGTGCTTGCATAATAGTATTCAGGTTCTTTTCCATCTGTGGGAAACATGTAACTCTTAAAATGCTGCTACTGACAGTGGTCGTCAGCATGTATAAGAGCTTCTTCATCATCGTGGGGATGTTCTTGTTGCTGCTGTGCTACGCCTTCGCAGGAGTTGTCCTGTTTGGCACAGTGAAATACGGGGAGAATATTAACAGACATGCAAATTTCTCCACTGCTGGCAAAGCCATCACAGTCCTCTTCCGAATTGTCACAGGTGAAGACTGGAATAAGATTATGCATGACTGCATGGTGCTGCCTCCTTTCTGTACACCGGATAAACACCGTTACTGGGAAACCGACTGTGGCAACTATGCCGGCGCCCTTATTTACTTCTGCTCCTTTTATGTCATCATCGCATACATCATGCTCAACTTGCTTGTGGCTATAATTGTGGAGAATTTCTCACTGTTTTACTCCACTGAAGAGGACCAGCTACTGAGCTATAATGACCTGCGTCATTTTCAGATCATCTGGAACATGGTTGATGACAAAAGAGAGGGTGTGATCCCCACCTCACGGGTAAAGTTTCTGCTGCGGCTTCTGAGAGGGAGGTTGGAGGTCGATCTGGATAAAGATAAACTCCTGTTCAAGCACATGTGCTACGAGATGGAGAGACTGCATAACGGGGGGGACGTCACCTTTCATGATGTCCTGAGCATGCTGTCCTACAGATCAGTGGACATTAGAAAGAGCCTTCAGCTGGAAGAGCTCCTGGCACGGGAACAGCTGGAGTACACTATCGAGGAAGAGGTCGCGAAGCAGACCATTCGCATGTGGCTGAAGAAGTGTCTAAAGCGCATCAGAGCGAAGCAGCAACAGTCATGCAGTATCATTACCAGCCTCAGAGAGAGCCAGCAACAGGAGTGGAGCCGATTCCTCAACCCTCCCAGCATTGAGACCACGCTGCCCAACGAAGACGTCAATGCCAACAACAAGGACAACCCTTCCCAGCCAGAGacAAGCAGTCAGCAACAGCTGCTGAGCCCCACACTCTCAGACAGAGGAGGCTATCGGCAAGATTCAACAGAAATGGGAAAACCACAGAGGAAATTCGGTCAGTGGCGCCTACCAGCAGGTCGGACTAGCATGAAGTCTATCGTTTGCAAGATGAACCCGGTGTGTGATGAGGCCTCCTCGGGCTCTGAGGTGAAGAAGTGGTGGACGAGACAGCTGACAGTGGAAAGTGACGAGAGTGGCGATGATCTCATTGACATTTAA

Function

GO: NA

KEGG:

id description
K21863 NALCN; sodium leak channel non-selective protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89858 lncRNA downstream 69082 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 79828 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 122117 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 135675 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 137866 26265731 ~ 26266216 (-) True G71875
TU89953 lncRNA upstream 503739 26932268 ~ 26932637 (-) True G71961
TU90016 lncRNA upstream 856891 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 907166 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 990287 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 1101767 27530296 ~ 27530643 (-) True G72089
AMCG00014671 mRNA downstream 43091 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014675 mRNA downstream 67103 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014666 mRNA downstream 243794 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014662 mRNA downstream 368255 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014663 mRNA downstream 502388 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014674 mRNA upstream 152 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014672 mRNA upstream 93567 26522096 ~ 26539562 (-) True AMCG00014672
AMCG00014678 mRNA upstream 214711 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014679 mRNA upstream 252651 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014686 mRNA upstream 473692 26902221 ~ 26904187 (-) True AMCG00014686
TU87063 other downstream 14741589 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15605935 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17086915 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18019858 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18245492 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1901210 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2960761 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5834638 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6168933 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6168933 32597462 ~ 32619149 (-) False G73127

Expression Profile