RNA id: AMCG00014671


Basic Information

Item Value
RNA id AMCG00014671
length 2303
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00014671
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26346500 ~ 26360991 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCggtatttgtgtttttagcaCTGGTGTCGTTGCATactgcacacatgcacattagTGAGACTTATGTATTTGGCTCCTCGCTTTTGCAgatgtctgtgtgttgctgACTGAGAGTATTGCGTGGTCAGCGGCTTTCGGAGTAACCTGACGGAGTCTCCAGTAGTAGCAAGAAATCATGCATTGTAATGTAATCCGAATCAAAATGCCGAGGCTATAAGTGACCATGCTGTGGCCCAAGGACATTGAGAAACACCTGCCACGATGGTACTGTCTGAACTGCACTGGGACCACCATATAGTCCTGCCCAGGCTCACCCCCTCCCAGGCCAGGGTTCTGGTTGGTCTGGTAGCTTTCATCTGTTTTGCAAATAGCCACGATGGCGACTTTGTCTTTGATGATTCAGAAGCTATTGTCAATAACAAGgttgcGGGCATCGTTGGCAGGGCTGACCTCTTATGTGCGCTGTTCTTTCAGTTGTCCTTCCTCAGCTATTGCAAAGCCTTTCATGGAGATAGTAAAGATGACAAGTTCTCAGTTTCATGGACTATTATCAGCCTTCTGCTGTGTGCAGTGGCCATGCTCTGCAAAGAGCAAGGCATCACGGTTTTGggaGTCAATGCTGCTTTCGACGTTCTTGTGATCTGCAGTGTAAATTTCAATGAACTGTGCCAGCGGCTgctaaacaaagcaaaaccgTTAGAGATTAATGAATTTTTCAGAAAAGGATTCCTGACAAGAATGGGTCTCCTCACCCTTGGGGGAACCATCCTTTTGTACACACGGTGGAGGATCATGGGAACTGGCCCCCCAGCATTCACTGAAGTGGATAACCCGGCCTCCtttgcagaaaatatatttgtacgGACTGTGAACTATAATTACTACTACTCTTTGAATGCATGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTACCACTTATTAAATCAGTCAGTGACTGGAGAATAATCTCACTACTGCTTCTCTGGATCTGCTTGATTGGGTTGATAAGCCAAGCTTTATGCTCCGAGGACAGCAGTAAAAGAAGCAATCTGTTCTTCCGAGTGGGATTCGTGATCGCAGAAAGAGTCCTCTATCTGTCCTCGGCTGGGTACTGTCTGATTGTGACGTACGCAATTGGCTGTTTATGTTGCCGTTGGAAGAACTACAAGAAACTCTTCCGTGTGGCACTGCTGGCCCTCCTGTGTGTGAATGCAGTGCGCTGTGCGGTCCGGAGCAGGCAGTGGAGGTCTGAGGAGAGCCTTTTCACCAgcgccctgtctgtctgcccccTCAATGCGAAAgttCATTACAATGTTGGCAAAAACCTTGCCGACAGGGGCAATCAGGCAGCTGCAATCAAATACTACAGGGAAGCAGTAAGGTTGAACCCGAAGTACGTCCATGCAATGAATAACCTGGGAAACATCCTGAAGGAATGGAATGAGTTGCAGGAAGCTGAAGAATTGCTCTCTAGCGCTGTCCAAATCCAGCCTGATTTTGCTGCTGCATGGATGAATCTGGGCATTGTACAAAACAGCTTAAAGAAGTTTGAGGATGCAGAGAAAAGTTATTGGAATGCAATTAAGTTCAGGAAGAAATATCCAGATTGCTACTACAACCTTGGAcgtttgTACGCAGACCTGAATCGCCATGTAGATGCCCTGAATGCGTGGAGGAATGCCACCATGCTGAAATCAGACCACAGTTTGGCGTGGAACAATATGGTCATTCTACTAGATAACACAGGAAACCTGGCACAAGCAGAATTAATTGGCAAAGAAGCCTTAAAATTACTTCCTAATGATCACACCATCATGTTTTCATTGGCTAATGTTCTGGGGAAACTACAGAAATACAAGGAGTCAGAGGGTCTGTTTCTTAATGCACTGAAAATCAACTCCAATGCTGCCAGTTACCACGGTAATCTAGCTGTCCTCTACCATCGCTGGGGAAAACTTGACTTGGCCAAGAAACACTATGAGCTCTCTTTAAATCTTGACCCCAGTGCCCCAGGGACCAAGGAGAACTACAACATGCTAAGGCGGAAGCTGGAGCAGCTACAGAAAAAGGGATCTGCTTGATGATGACCCGCGCACACCATTAATGCATGCTGCAGATATTTGATCTGAATCTTTATACTGTCCACTGAGTTTACATTCTGGAAgcaaaaagaggaaaaagaaatacacttgAAACCGCtgacttttaaatgtatcaccATTGTCTATAAATAATTGAAGATCTTTAGAGTGGCAATAAAATTCAGTTTCTGTTTTGA

Function

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89858 lncRNA downstream 11500 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 22246 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 64535 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 78093 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 80284 26265731 ~ 26266216 (-) True G71875
TU89953 lncRNA upstream 571277 26932268 ~ 26932637 (-) True G71961
TU90016 lncRNA upstream 924429 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 974704 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 1057825 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 1169305 27530296 ~ 27530643 (-) True G72089
AMCG00014675 mRNA downstream 9521 26336175 ~ 26336979 (-) True AMCG00014675
AMCG00014666 mRNA downstream 186212 26154064 ~ 26160288 (-) True AMCG00014666
AMCG00014662 mRNA downstream 310673 25901904 ~ 26035827 (-) True AMCG00014662
AMCG00014663 mRNA downstream 444806 25901449 ~ 25901694 (-) True AMCG00014663
AMCG00014658 mRNA downstream 494529 25774969 ~ 25851971 (-) True AMCG00014658
AMCG00014673 mRNA upstream 43091 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014674 mRNA upstream 67690 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014672 mRNA upstream 161105 26522096 ~ 26539562 (-) True AMCG00014672
AMCG00014678 mRNA upstream 282249 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014679 mRNA upstream 320189 26681180 ~ 26698625 (-) True AMCG00014679
TU87063 other downstream 14684007 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15548353 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17029333 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 17962276 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18187910 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1968748 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 3028299 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5902176 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 6236471 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 6236471 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074449 False 2748 mRNA 0.46 18 NC_007120.7 31497901 ~ 31525040 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_01550846_01564109.mRNA True 3377 mRNA 0.45 17 CI01000009 1550784 ~ 1565168 (-)