RNA id: AMCG00014860


Basic Information

Item Value
RNA id AMCG00014860
length 1869
RNA type mRNA
GC content 0.60
exon number 16
gene id AMCG00014860
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37602472 ~ 37616362 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTCAGGATCTTCAAGAAGAAGGCTGGCACccggcgaccgcccagcagctCCTCCCACTGCCCAGCCCACCAGAACGCTTATAGCGAATCCCTGGGCAGCTATGCCAGCGAGGAGCCAATCAAGGCTGAGGAGTACTGGGgtATTGCCCCCTCCGTGAGAGAACTCCACCGCAGTAGCAGGGGGGGCTCCCGCAGTAAGCTGCCCCCCCCCAGTGCAGACGGGCAGGGCCACTCTTCCGGCTACTCCTCCTCTGAGGAGGGCGGCTCTGGTTCTTCCCAAGTCTTGCAAGTCCAGCCTGGACTGGGATTCTGGGATCTCCTCCTGTCTCCAGgcaaGGCAGTGGCGATGCTGTTCTGGTGGCTGGGCACGGCCTGGTATAGCCTGACCACTGGGGCCTCCATGCTGGATGTGTTTCTGCTTAGCAGgcacACAGGCACAGTGAAGAAAGCCATTGAGCTGCTCCTACTCCTGCTCCTCTTGGCGtttgGTATTTGGTACTGGTACCCATTCCTGACTCTTTCTTCGGGGGGTGCAAGTACTGTGGCTCCCTTGCACAGCTCTCAGGGTAGCCCTGGCATCAGACAGGACAGTTCAGTTATTTCGCGTCTGTCAGCCCTGGAGAAGGACATGGGGAGGAtgctgggagagagagcgagggagggcgagagagagaaaatgagggagggaggtggaggCCTGACCCCAGAGATGACATCCTCACTCATCCACATGGTGCTGTCTGAGAGAGAGGCGAgctggagagaagagagagagacattgcaGAGGCAGATCACGCAGCTAAAACAGGATGGAGAGACTAAGTGGCAAGAAACTCAAGACAAACTACAGCTGGCTTCTAAGAGACTTCTGGCTGAAGTGTCTGAGTTGAAATCCACTGTGACAGGCCTGCAGACGATGGATGACAGCAACACACTGGAGCGGCTGACCGGCCTGGAGCAGCAGCTTAGGATCCTCCACAGTGACTTCAACACCCTGAACACAGACCACCACTCCCTGAGAGAGCAACTCCACACACTGGACACCTCACACTCGCAGgtgcgCTCCGAGCTGGCTGAGTGGCTGGCGCAGTACCTCTCCAGCCCCCCAAAGGGCGCTGTGCCAGTGGTGCTGCGGCCCGAGATGCAGGAGGCGCTGAGGGGGCTGGAGCGGCAGgaggtACACAGAGTGGTGCAGAGGGCGCTGGCTTTGTACAGGGCTGATGGGATTGGGCTGGCGGACTACGCACTGGAGTCTTCAGGTGCCAGTGTGATCAACACACGCTGCTCTGAGACTTATGAGACCAAGACGGCCCTGCTCACTCTGTTTGGCATCCCCATGTGGTACCACTCCCAGAGCCCCCGGGCGGTGATCcagCCGGATGTCCACCCTGGTAGTTGTTGGGCTTTCCGTGGTTCCCATGGTTTTGTGGTGGTGCAGCTATCCAGCCCAGTGCGGCCCCGCGCTGTGACTCTGGAGCACATCCCCCGCACCCTGTCCCCCTCTGGCCGCATTGACAGCGCCCCCCGCCACTTCGCCGTATATgGAATGACCAGTGAGAAGCAGGAGGAGGGGACCCTGCTGGGGCAATTCACTTACGACCAGGATGGAGAGCCCATACAGACCTTCACTCTGCCggactCACTGCAGGAGGTGTACCCCCTGGTGGAGCTCAGGGTGCTCAGTAACTGGGGCCACCCAGAGTACACCTGCGTCTATCGCTTCCGGGTTCATGGCGAGGGGCCCCACCTCTGAGCACCAGCCAGGGCACTGACGGGGAGGGACGTGGCAAAAAGAAGATCAGGATGAATAACAAGgatggagggtggggggggagtagAAGGAATGGTTGAAGAACAAGGGGGGAGG

Function

GO: NA

KEGG:

id description
K19347 SUN1_2; SUN domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92243 lncRNA downstream 20310 37581766 ~ 37582162 (-) True G73866
TU92234 lncRNA downstream 28332 37573738 ~ 37574140 (-) True G73857
TU92230 lncRNA downstream 70496 37531470 ~ 37531976 (-) True G73853
TU92228 lncRNA downstream 84141 37518043 ~ 37518331 (-) True G73851
TU92178 lncRNA downstream 429301 37172930 ~ 37173171 (-) True G73803
TU92288 lncRNA upstream 66877 37683239 ~ 37683542 (-) True G73908
TU92291 lncRNA upstream 87484 37703846 ~ 37704048 (-) True G73911
TU92297 lncRNA upstream 162971 37779333 ~ 37783575 (-) False G73916
TU92299 lncRNA upstream 210117 37826479 ~ 37826702 (-) True G73918
TU92314 lncRNA upstream 226808 37843170 ~ 37844343 (-) False AMCG00014865
AMCG00014861 mRNA downstream 44263 37554889 ~ 37558209 (-) True AMCG00014861
AMCG00014859 mRNA downstream 181305 37417533 ~ 37421167 (-) True AMCG00014859
AMCG00014857 mRNA downstream 242763 37323742 ~ 37359709 (-) True AMCG00014857
AMCG00014858 mRNA downstream 292655 37302224 ~ 37309817 (-) True AMCG00014858
AMCG00014854 mRNA downstream 486806 37080157 ~ 37115666 (-) True AMCG00014854
AMCG00014865 mRNA upstream 185732 37802094 ~ 37864483 (-) True AMCG00014865
AMCG00014866 mRNA upstream 255044 37871406 ~ 37887963 (-) True AMCG00014866
AMCG00014871 mRNA upstream 328785 37945147 ~ 37954312 (-) True AMCG00014871
AMCG00014875 mRNA upstream 421001 38037363 ~ 38040051 (-) True AMCG00014875
AMCG00014874 mRNA upstream 431124 38047486 ~ 38052112 (-) True AMCG00014874
TU92209 other downstream 277165 37325020 ~ 37325307 (-) True G73833
TU92007 other downstream 1208979 36373151 ~ 36393493 (-) True AMCG00014845
TU91951 other downstream 1348285 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 1420121 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 1993795 35580626 ~ 35608677 (-) True AMCG00014839
TU92296 other upstream 162971 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 726960 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 795798 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 815901 38432263 ~ 38432875 (-) True G74115
TU92559 other upstream 873961 38490323 ~ 38490940 (-) False AMCG00014891

Expression Profile