RNA id: TU91588


Basic Information

Item Value
RNA id TU91588
length 837
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G73309
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 34462489 ~ 34463325 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaagttatcagatttccttaactcatcagctgggaactggtttacatcaaaagtgacagtcttgggtggatggcaccgagaataggccaaatagtttggaatcctgctgtgaaatgtctggggaagggggcctgtaggtaataaaaactctttgaaatggacacgagccgaaatcccgacacagagctacgaacccgggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcacaaactcaagaaccaatcacctattgatctgacaggcgtataaaggacAGCGCACggcatctatctctctctctctctcacccgaaccagtaactcgctgccacagctcaacttgtagctctgttgcccgaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacaaagaattcttttaaaggactttattaaataaagaactttacagactgcgcatgcccgcctgtacccatctgatcagtggagttttacagctggacaattgactaagtcgactgaatacgaaagtgtcagtcagttaaaatagctatttgagtcttaagaaacttgacccttggaacgaacagggccctgctttcctcaaagactttgtcttcaagtaactacggtggaaaccctgcttacaaagaagattttgtgtacaaccttggagccttcaaaccagtggaaaatctgtttggaaaagaatctacattcgcgaaaccccaacttccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91577 lncRNA downstream 99475 34362758 ~ 34363014 (-) True G73298
TU91575 lncRNA downstream 168949 34293273 ~ 34293540 (-) True G73296
TU91566 lncRNA downstream 266243 34195967 ~ 34196246 (-) True G73291
TU91563 lncRNA downstream 338840 34123278 ~ 34123649 (-) True G73288
TU91543 lncRNA downstream 609465 33852695 ~ 33853024 (-) True G73270
TU91598 lncRNA upstream 106225 34569550 ~ 34603156 (-) True G73319
TU91609 lncRNA upstream 316797 34780122 ~ 34780590 (-) True G73330
TU91614 lncRNA upstream 374308 34837633 ~ 34837943 (-) True G73335
TU91615 lncRNA upstream 402200 34865525 ~ 34865745 (-) True G73336
TU91651 lncRNA upstream 760203 35223528 ~ 35223860 (-) True G73365
AMCG00014826 mRNA downstream 1028107 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014825 mRNA downstream 1343161 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014824 mRNA downstream 1656196 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014823 mRNA downstream 1669064 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014818 mRNA downstream 1809069 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014828 mRNA upstream 101161 34564486 ~ 34565202 (-) True AMCG00014828
AMCG00014829 mRNA upstream 447268 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014830 mRNA upstream 479650 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014832 mRNA upstream 709544 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014839 mRNA upstream 1118390 35581715 ~ 35592456 (-) False AMCG00014839
TU91480 other downstream 1656194 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 1843340 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 1847683 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 2199062 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 5064184 29389290 ~ 29398305 (-) True G72477
TU91607 other upstream 306258 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 1117301 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 1638033 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 1790449 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 1909826 36373151 ~ 36393493 (-) True AMCG00014845

Expression Profile