RNA id: TU7477


Basic Information

Item Value
RNA id TU7477
length 2821
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G5223
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22715536 ~ 22733117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAACAGCAAGTTTATTTTGGTTAGGTTCATTGATACATAAAGCACGTCCTGAGGGAGTGATGAGCGAAAGATGTGTTGCCATAGAAAGGTAGTGGTGGGAAGGGGGAGTGGATAGGTCGAGAATTGTGGGTAGTTGTGAACCATATGAAAAGAATGAGAAGGGAGCAAAATGGAAGTTAAGGGGATCAATTACAAGTCAGCCAGCAGACTAGAGGAGAATTTAATGAGAATTATACTCTACTCCAGAGAACGTCTCATCGCAAAGTCCAGAGATAGGCAGACATAACACCCAAAAGACCCCATAGTATAAGCAGCTCCAATGCAACGTGGTAGGCATTATGAACCTCTTTTGTAGttgctttgaaatgaaaaacaaaaggcacaATGAATTTCAACTCATTCTTTATCTTTAATATGCACAAgagttgaaaaaaaatactgatgagCCACCTTAAAGAGAAATTCAGTTctaaaatttataaaaacatacaaacaatcAGAGGCCAAAATGCGATCTGTCgctttttagattaatttttttttctttagcaagTAAAAATCTTGCAACAAGCAATAAGCTTGTATCCATTTCTGATACAAGACAAAAAACTTCTTTAAAGTGGCTCGTTTTCTAGTTGTCTAGATAAGTTCATGAAtttcaaacctgtttttttctttttgttcaacAAATAATGGCTAATTCAAAAATTATCAGGGCTGCCTTCAGCTTCCTTACTGTCTTTGTCAGCAGTTTGCGGCCCAAACATAACTACTTTAgttcaaatgcaattttttccCATACATCCCTTTACAAGTTAATGCacagggaaaaaagaaaaaaaaaaaaaaaaaaacatccagtcACAACAGTAAGAAAGCCCATTTTCCAAATAATGGCAGTCATTTGCCATTATAAAATCAAAgttaaatcaaaaatgaaaaaaaaaaaaaatacccctATTGGCTGTAAATCAATAGTCACAACGTTATTATTGTTCTGTAGCGTCCCAACAATGTCTAGTGGACCTAAGTGGTAGCTTCGCATTATATACCTAAACaagaaatatacttttattttagttggtACAATTAGGTTTTGTAGCAAgtgaaataagattaaaaaccaactaaacaaaaaaaaagaaccacaATGTTATGGATCTCTTTTCCCCATTGCTTGTATAGTCAAAATTAAAGCGAACATCGCTCTCCACTTACATTAAGCAATAAAACGGGAAAACCAAAAGTGTGCGCGTAAGACTGGAAAAACTGCAAAAGCGGAAGCTCCactgatcaaaacaaaaaaaagaactcaCAATCCAATCACTGTTGCAAAGTTTCTTGTGGTTTTGACTACCAAGTGACAAAATGCACTGATTTAGTGAAAATATCCTCCGAACGGTTACAACTGGGCTTATCCCGATGAACTTATTACTATGCTTACAGACAGGAAGTAGAGAAGATGAATCCAGAAAATAAAAAGCGCTGCCAGAGCACCCTTGTTAAGCAGAAAGACCTGTTAAGGTTATCTCAAAGAACTTTCAAAGGCTGGGGCATCCCCTTTAAAAGTCCTGGCCAAATTGACAAATCACAGAGGTTCCTCCTTTGACATGTCCGACAGTCCCACTGCAAACCAAATAAAGATCGACACGATGAATGTCCACTACACTATCGCTGCAGAACTTGAAAATGAGGGCGTTTGACTGCCTTAAATGAAATTTTCTCCATTCAAGTTTGTGTGATCTTCtgacgtgatttttttttttttTTTAtgaacaaaagcaaaatatttattactaaatacacaaaacacaaataagacCTGTCAGAGTagaacatacaaaaataacatcatatatACTCAATTAGTTAAAACCAGCTTTGTGATCGGTTGCAACAGTTTATAATTAGAGAACACAGAtaatcagggttttttttttccttttgggtaaaatattaaatatttaaggttAATTACCCTTACACTTCTTACTCTATTGTACCTCTCACATTTAGCATATTAGTTACATTAAACTTCAATAAgacgtaatatatatatatatataacaacagaaaatacaaCCAAATATAATACAAACGCAACGAAATTgacatatgtatttttgtaaagctTGTATAAATCcaagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtaggTTATACATCacacagacaacaaaaaaatccaaacgATCTTTGACAGTATTCTTGAATCAAAATCAGCATTACAGGTCAGCATCACTCTGTTTTCTTGAAATGCATAAAGTATAAAGTCATGATAGTCAGCTCTAATACGTGACTCAGTTATTACCCGTTTTTGTCTTTCAACAAAAATCCATACATTCGCAACAGCACACTGTTAATACCGCACATGAGTAAGCGTACAGCGTTTGATGGAGTCTAACtgaaagatgtatttttttgaataaaccTTTTGAAATCAGTACACGGATCATTAAAGCGCCGAAGGTATAATGGAGTACGACTTTGGATGACGTTAGAGTAGTAGAAATGGGCAGATGTGCGTCAGTTTTACACAAATCAAAATGGCAGATAGCGTCGTTTCAGCTCCCTCCAGTGGGACGAGACACACAATCATCAAGAGTTCAGTCATAACCGCAGCACTTCCATTCCCGGCTGCggagtacattttgttttgtgtatagCATGCCGGGAACTTTAGAAGATCTGTTGCTCAAACAAAATCTTTTGGTAGCCTTGCGGTGGAGGATGGTAGAAGTCAGTGAACTGGCAATCCAATATCGCACTATCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7448 lncRNA upstream 176064 22539270 ~ 22539472 (+) True G5206
XR_006251667.1 lncRNA upstream 185048 22526122 ~ 22530488 (+) True LOC122350977
TU7385 lncRNA upstream 328008 22385266 ~ 22387528 (+) False G5178
TU7390 lncRNA upstream 328008 22385266 ~ 22387528 (+) True G5178
TU7341 lncRNA upstream 480007 22232347 ~ 22235529 (+) True G5159
XR_006251146.1 lncRNA downstream 2317 22735434 ~ 22741631 (+) True LOC122346574
TU7479 lncRNA downstream 3824 22736941 ~ 22741614 (+) False LOC122346574
TU7519 lncRNA downstream 19369 22752486 ~ 22754241 (+) False LOC122331092
XR_006248131.1 lncRNA downstream 19515 22752632 ~ 22757654 (+) True LOC122331092
TU7533 lncRNA downstream 74533 22807650 ~ 22809030 (+) True G5264
XM_043241279.1 mRNA upstream 3575 22710993 ~ 22711961 (+) True arl11
XM_043235970.1 mRNA upstream 19795 22685839 ~ 22695741 (+) False cab39l
XM_043235961.1 mRNA upstream 19795 22685839 ~ 22695741 (+) False cab39l
XM_043235954.1 mRNA upstream 19795 22685869 ~ 22695741 (+) True cab39l
XM_043237653.1 mRNA upstream 30918 22623552 ~ 22684618 (+) False mcf2la
XM_043244851.1 mRNA downstream 107571 22840688 ~ 22851393 (+) True LOC122348949
XM_043236540.1 mRNA downstream 169639 22902756 ~ 22909636 (+) False cryzl1
XM_043236531.1 mRNA downstream 171453 22904570 ~ 22909636 (+) True cryzl1
XM_043236545.1 mRNA downstream 171458 22904575 ~ 22909636 (+) False cryzl1
XM_043236558.1 mRNA downstream 180523 22913640 ~ 22916406 (+) True cbr1
unassigned_transcript_107 other upstream 831028 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 1080484 21632215 ~ 21635052 (+) True G5037
TU7152 other upstream 1094956 21590877 ~ 21620580 (+) False rnf24
TU7127 other upstream 1354261 21321465 ~ 21361275 (+) False LOC122348864
unassigned_transcript_103 other upstream 2603022 20112442 ~ 20112514 (+) True trnak-cuu
unassigned_transcript_108 other downstream 325915 23059032 ~ 23059103 (+) True trnae-cuc_5
TU8005 other downstream 813325 23546442 ~ 23554625 (+) False G5559
TU8004 other downstream 813379 23546496 ~ 23554625 (+) False G5559
TU8228 other downstream 1551654 24284771 ~ 24293329 (+) False G5649
unassigned_transcript_109 other downstream 1934418 24667535 ~ 24667607 (+) True trnar-ccg_14

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU138946 True 3915 TUCP 0.45 2 NC_053121.1 3902991 ~ 3925309 (-)
bowfin (Amia calva) TU138946 True 3450 lncRNA 0.33 1 CM030134.1 11790052 ~ 11793501 (-)
bowfin (Amia calva) TU87100 True 2420 lncRNA 0.36 2 CM030128.1 11719318 ~ 11722767 (+)
tiger barb (Puntius tetrazona) TU138946 True 1435 TUCP 0.39 4 NC_056711.1 14079532 ~ 14082758 (-)
mexican tetra (Astyanax mexicanus) TU138946 True 3300 lncRNA 0.40 2 NC_035908.1 12063536 ~ 12067895 (+)