RNA id: TU7479


Basic Information

Item Value
RNA id TU7479
length 568
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC122346574
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22735434 ~ 22741631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAAGAGCGCGTGATGTGTTCGCAGTTATGCGGTGGAACCGTTTTACCCAACGTCCCTACTTTTCATAGGATTATTGCAGTAttgtaaaactatatatatgcgTATTTATTTTGACTGACATCACCACATTGTCTTTTGGGGTGACTAGTAAGCGGATGTCGAGcacaTTTCTATTCTACAAGTGATGGGTGGATTTTTTCTGGAGAAGTACAAAGTGCTCAAAATCTATTTGCATACTCTTAACTCTCTGGTCGGTTGTGGTGATTTGGTACTTGTTCTGAGAAACACATGATATTCACACTGCTCTTACATCACCTGCCTGCCTCTCCCTCACTCACTATTACGAGGCACTTCATGAGGATATagaagacagacaaaaaaaaaggttctaaTATACTCCTggtattttatgcatttcagaAAAGAATTCAGCTGAACCATGCTTCTTGTAATCAATATAGTTAAAATGATTCAACTAGTGGTGTACTTACAGTTACTGTGTCACAGCTCAGAGTCATGCCGTGTGCTCGACATTCCTTTcctggagaaaacaaaaataaaggaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7477 lncRNA upstream 3824 22715536 ~ 22733117 (+) True G5223
TU7448 lncRNA upstream 197469 22539270 ~ 22539472 (+) True G5206
XR_006251667.1 lncRNA upstream 206453 22526122 ~ 22530488 (+) True LOC122350977
TU7385 lncRNA upstream 349413 22385266 ~ 22387528 (+) False G5178
TU7519 lncRNA downstream 10872 22752486 ~ 22754241 (+) False LOC122331092
XR_006248131.1 lncRNA downstream 11018 22752632 ~ 22757654 (+) True LOC122331092
TU7533 lncRNA downstream 66036 22807650 ~ 22809030 (+) True G5264
TU7534 lncRNA downstream 66036 22807650 ~ 22809030 (+) False G5264
TU7535 lncRNA downstream 66036 22807650 ~ 22809030 (+) False G5264
XM_043241279.1 mRNA upstream 24980 22710993 ~ 22711961 (+) True arl11
XM_043235970.1 mRNA upstream 41200 22685839 ~ 22695741 (+) False cab39l
XM_043235961.1 mRNA upstream 41200 22685839 ~ 22695741 (+) False cab39l
XM_043235954.1 mRNA upstream 41200 22685869 ~ 22695741 (+) True cab39l
XM_043237746.1 mRNA upstream 52323 22656800 ~ 22684618 (+) False mcf2la
XM_043244851.1 mRNA downstream 99074 22840688 ~ 22851393 (+) True LOC122348949
XM_043236540.1 mRNA downstream 161142 22902756 ~ 22909636 (+) False cryzl1
XM_043236531.1 mRNA downstream 162956 22904570 ~ 22909636 (+) True cryzl1
XM_043236545.1 mRNA downstream 162961 22904575 ~ 22909636 (+) False cryzl1
XM_043236558.1 mRNA downstream 172026 22913640 ~ 22916406 (+) True cbr1
unassigned_transcript_107 other upstream 852433 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 1101889 21632215 ~ 21635052 (+) True G5037
TU7152 other upstream 1116361 21590877 ~ 21620580 (+) False rnf24
TU7127 other upstream 1375666 21321465 ~ 21361275 (+) False LOC122348864
unassigned_transcript_103 other upstream 2624427 20112442 ~ 20112514 (+) True trnak-cuu
unassigned_transcript_108 other downstream 317418 23059032 ~ 23059103 (+) True trnae-cuc_5
TU8005 other downstream 804828 23546442 ~ 23554625 (+) False G5559
TU8004 other downstream 804882 23546496 ~ 23554625 (+) False G5559
TU8228 other downstream 1543157 24284771 ~ 24293329 (+) False G5649
unassigned_transcript_109 other downstream 1925921 24667535 ~ 24667607 (+) True trnar-ccg_14

Expression Profile