DATASET ID: GSE159709 (melanoma)

Basic information

Tissue / Organ tumor
Experiment type disease
Sample adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
Source dataset ID GSM4838134
Project ID GSE159709
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Tumor ENSDARG00000003732 (mitfa) protein_coding marker DOI:10.1038/s41467-021-26614-z
    1 Tumor ENSDARG00000091298 (pmela) protein_coding marker DOI:10.1038/s41467-021-26614-z
    2 Interface ENSDARG00000016594 (haus4) protein_coding marker DOI:10.1038/s41467-021-26614-z
    3 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1038/s41467-021-26614-z
    4 Macrophages ENSDARG00000054610 (coro1a) protein_coding marker DOI:10.1038/s41467-021-26614-z
    7 Neutrophils ENSDARG00000102119 (si:ch73-359m17.2) protein_coding marker DOI:10.1038/s41467-021-26614-z

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)