DATASET ID: PRJNA640816 (2.9dpf)

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
Source dataset ID SRR12060555
Project ID PRJNA640816
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Melanoma cells ENSDARG00000020007 (col1a2) protein_coding marker DOI:10.7554/eLife.60005
    1 Melanoma cells ENSDARG00000012593 (col5a1) protein_coding marker DOI:10.7554/eLife.60005
    2 Melanoma cells ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.7554/eLife.60005
    3 Neural crest ENSDARG00000021032 (foxd3) protein_coding marker DOI:10.7554/eLife.60005
    4 Muscle cells ENSDARG00000033683 (tpma) protein_coding marker DOI:10.7554/eLife.60005
    4 Muscle cells ENSDARG00000099197 (actc1b) protein_coding marker DOI:10.7554/eLife.60005
    5 Pigment cells ENSDARG00000029204 (tyrp1a) protein_coding marker DOI:10.7554/eLife.60005
    5 Pigment cells ENSDARG00000006008 (dct) protein_coding marker DOI:10.7554/eLife.60005
    5 Pigment cells ENSDARG00000003732 (mitfa) protein_coding marker DOI:10.7554/eLife.60005
    6 Neuron ENSDARG00000033655 (stmn1b) protein_coding marker DOI:10.7554/eLife.60005
    6 Neuron ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.7554/eLife.60005
    6 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.7554/eLife.60005
    8 Pigment cells ENSDARG00000071475 (aox5) protein_coding marker DOI:10.7554/eLife.60005
    10 Pigment cells ENSDARG00000062688 (gpnmb) protein_coding marker DOI:10.7554/eLife.60005
    11 Glia ENSDARG00000009823 (pou3f1) protein_coding marker DOI:10.7554/eLife.60005
    11 Glia ENSDARG00000103732 (plp1a) protein_coding marker DOI:10.7554/eLife.60005

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)