DATASET ID: PRJNA415636 (brain)

Basic information

Tissue / Organ brain
Experiment type baseline
Sample adult, Zebrabow M, brain
Source dataset ID SRR6811819
Project ID PRJNA415636
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000015537 (gad2) protein_coding marker DOI:10.1038/nbt.4124
    2 Neuron ENSDARG00000027740 (adcyap1b) protein_coding marker DOI:10.1038/nbt.4124
    3 Radial glia ENSDARG00000010710 (msi1) protein_coding marker DOI:10.1038/nbt.4124
    4 Microglia ENSDARG00000098012 (itgae.1) protein_coding marker DOI:10.1038/nbt.4124
    4 Microglia ENSDARG00000090890 (cmklr1) protein_coding marker DOI:10.1038/nbt.4124
    5 Oligodendrocytes ENSDARG00000040946 (olig2) protein_coding marker DOI:10.1038/nbt.4124
    5 Oligodendrocytes ENSDARG00000036670 (aplnrb) protein_coding marker DOI:10.1038/nbt.4124
    5 Oligodendrocytes ENSDARG00000089477 (si:ch211-132g1.3) protein_coding marker DOI:10.1038/nbt.4124
    5 Oligodendrocytes ENSDARG00000029239 (syt9b) protein_coding marker DOI:10.1038/nbt.4124
    6 Lymphocyte cells ENSDARG00000055186 (ccr9a) protein_coding marker DOI:10.1038/nbt.4124
    7 Radial glia ENSDARG00000087556 (pacrg) protein_coding marker DOI:10.1038/nbt.4124
    8 Radial glia ENSDARG00000053831 (vtnb) protein_coding marker DOI:10.1038/nbt.4124
    9 Endothelium ENSDARG00000102100 (mrc1a) protein_coding marker DOI:10.1038/nbt.4124

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)