DATASET ID: GSE151354 (nkx3.2 mutant)

Basic information

Tissue / Organ cartilage
Experiment type growth
Sample 21dpf, nkx3.2 mutant
Source dataset ID GSM4575943
Project ID GSE151354
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Chondrocytes ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.7554/eLife.16415
    1 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.7554/eLife.16415
    2 Chondrocytes ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.7554/eLife.16415
    3 Perichondrium ENSDARG00000076120 (foxp4) protein_coding marker DOI:10.1016/j.ydbio.2014.12.007
    4 Articular chondrocyte ENSDARG00000036893 (f13a1b) protein_coding marker DOI:10.1242/dev.193409
    5 Chondrocyte-mitosis ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.193409
    6 Melanoma cells ENSDARG00000093303 (ifitm1) protein_coding marker DOI:10.1359/JBMR.080412
    6 Melanoma cells ENSDARG00000012593 (col5a1) protein_coding marker DOI:10.7554/eLife.16415
    7 Melanoma cells ENSDARG00000093303 (ifitm1) protein_coding marker DOI:10.1359/JBMR.080412
    8 Chondrocyte-mitosis ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.7554/eLife.16415
    8 Chondrocyte-mitosis ENSDARG00000114670 (ube2c) protein_coding marker DOI:10.1242/dev.193409
    8 Chondrocyte-mitosis ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.193409
    9 Chondrocyte-S-phase ENSDARG00000069093 (col2a1a) protein_coding marker DOI:10.7554/eLife.16415
    9 Chondrocyte-S-phase ENSDARG00000073699 (col9a1a) protein_coding marker DOI:10.7554/eLife.16415
    9 Chondrocyte-S-phase ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.193409
    10 Hypertrophic chondrocyte ENSDARG00000054753 (col10a1a) protein_coding marker DOI:10.7554/eLife.16415
    10 Hypertrophic chondrocyte ENSDARG00000044276 (spp1) protein_coding marker DOI:10.1242/dev.193409

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)