DATASET ID: GSE158142 (8dpf)

Basic information

Tissue / Organ brain, eye
Experiment type baseline
Sample 8dpf, untreatment
Source dataset ID GSM4793234
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Neuron ENSDARG00000037997 (tubb5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000038205 (her2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000032963 (her12) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000054562 (her15.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000054560 (her15.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000056732 (her4.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000062152 (chaf1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Epithelial cells ENSDARG00000019949 (serpinh1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000002403 (nusap1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000114670 (ube2c) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000058471 (plk1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000004713 (mad2l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000078654 (tpx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000038066 (kpna2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000037640 (aurkb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000011094 (ccna2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Progenitors ENSDARG00000024488 (top2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000056934 (hepacama) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000053262 (atp1b4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000102453 (slc1a2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000057598 (s100b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Glia ENSDARG00000041799 (cx43) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Cornea ENSDARG00000058005 (hgd) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Cornea ENSDARG00000059391 (gyg1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells -- (hbz) -- marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells ENSDARG00000034852 (nt5c2l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells ENSDARG00000012881 (slc4a1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells ENSDARG00000105154 (creg1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Erythroid cells ENSDARG00000018146 (gpx1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000070107 (six7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina ENSDARG00000102430 (opn6a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Retina -- (tmx3) -- marker DOI:10.1016/j.neuron.2020.09.023
    13 Microglia ENSDARG00000040528 (lgals3bpb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Microglia ENSDARG00000104077 (fcer1gl) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Microglia ENSDARG00000040178 (havcr1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Microglia ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Microglia ENSDARG00000067797 (spi1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Glia ENSDARG00000090980 (apof) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Glia ENSDARG00000031506 (flvcr2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Glia ENSDARG00000059053 (slc13a4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    16 Glia ENSDARG00000067848 (nmrk2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Eye ENSDARG00000104359 (anxa1c) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Eye ENSDARG00000101181 (s100w) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Eye ENSDARG00000102750 (cdh1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Eye ENSDARG00000095147 (krt96) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Eye ENSDARG00000041051 (mid1ip1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)