DATASET ID: GSE150498 (nod2-|-, untreated)

Basic information

Tissue / Organ intestine
Experiment type disease
Sample 6dpf, nod2-/-, untreated
Source dataset ID GSM4878623
Project ID GSE150498
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Mesenchymal cells ENSDARG00000093303 (ifitm1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    4 Brush border cells ENSDARG00000023151 (ucp1) protein_coding marker DOI:10.1038/s41586-021-03484-5
    5 Proliferative myeloid + ILC ENSDARG00000026350 (wasb) protein_coding marker DOI:10.1038/s41586-021-03484-5
    6 Enteroendocrine + ILC3 ENSDARG00000004015 (adcyap1a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    7 Squamous epithelial ENSDARG00000014488 (ca2) protein_coding marker DOI:10.1038/s41586-021-03484-5
    8 Corpuscles of stannius ENSDARG00000055395 (foxq1b) protein_coding marker DOI:10.1038/s41586-021-03484-5
    9 Stromal ENSDARG00000034588 (scn4ab) protein_coding marker DOI:10.1038/s41586-021-03484-5
    10 Endothelium ENSDARG00000014059 (cldn5b) protein_coding marker DOI:10.1038/s41586-021-03484-5

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)