Fish Single-cell RNA Database

GENE ID: ENSDARG00000087120

Symbol	Location	Gene type	Genome version	Species
slc5a8	4: 5850225 ~ 5863906 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000087120 (slc5a8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000087120	slc5a8	4: 5850225 ~ 5863906 (-)
ENSDARG00000099522	si:ch73-252p3.1	7: 73801377 ~ 73816333 (+)
ENSDARG00000078604	tbc1d10b	3: 32789605 ~ 32811362 (+)
ENSDARG00000059712	slc19a2	6: 16436572 ~ 16456169 (-)
ENSDARG00000056551	slc22a13a	2: 23731194 ~ 23745290 (+)
ENSDARG00000007534	itln1	1: 15204633 ~ 15224338 (+)
ENSDARG00000022261	pdzk1	9: 5862040 ~ 5892075 (+)
ENSDARG00000097901	si:ch73-90p23.1	16: 50889118 ~ 50897887 (-)
ENSDARG00000079661	CU855821.1	16: 50917913 ~ 50918908 (-)
ENSDARG00000043334	ccdc6a	17: 20673963 ~ 20695998 (-)
ENSDARG00000075532	slc4a11	13: 13770980 ~ 13922696 (+)
ENSDARG00000058587	terb1	18: 7456597 ~ 7478152 (+)
ENSDARG00000017595	ccdc6b	12: 7609928 ~ 7639149 (-)
ENSDARG00000104687	slc16a9b	12: 7589193 ~ 7607114 (-)
ENSDARG00000063088	si:dkey-211g8.6	19: 10611788 ~ 10612774 (-)
ENSDARG00000058535	si:dkey-211g8.7	19: 10624644 ~ 10627752 (-)
ENSDARG00000039661	slc36a4	15: 41169211 ~ 41235027 (-)
ENSDARG00000079294	or115-15	21: 40195452 ~ 40197014 (+)
ENSDARG00000013014	or101-1	21: 40313877 ~ 40317054 (-)
ENSDARG00000056277	or132-5	21: 25375172 ~ 25376738 (+)
ENSDARG00000068659	or104-2	10: 36349225 ~ 36350693 (+)
ENSDARG00000037415	dlgap1b	24: 9162512 ~ 9268048 (+)
ENSDARG00000059166	slc22a13b	24: 20006711 ~ 20016817 (-)
ENSDARG00000087303	cebpd	24: 35564668 ~ 35565927 (+)
ENSDARG00000101008	soul4	22: 38468036 ~ 38480186 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000087120

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences