Fish Single-cell RNA Database

GENE ID: ENSDARG00000058587

Symbol	Location	Gene type	Genome version	Species
terb1	18: 7456597 ~ 7478152 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058587 (terb1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000039302	terfa	4: 77973876 ~ 77996958 (+)
ENSDARG00000087120	slc5a8	4: 5850225 ~ 5863906 (-)
ENSDARG00000039477	terb2	7: 30929459 ~ 30932094 (-)
ENSDARG00000086150	wrap53	7: 20917966 ~ 20939108 (+)
ENSDARG00000090664	moto	3: 31606781 ~ 31619463 (-)
ENSDARG00000055350	sun1	3: 13190012 ~ 13258898 (+)
ENSDARG00000078604	tbc1d10b	3: 32789605 ~ 32811362 (+)
ENSDARG00000003697	slc5a8l	6: 49063289 ~ 49078702 (-)
ENSDARG00000014280	dlgap1a	2: 29491314 ~ 29692825 (+)
ENSDARG00000007734	stn1	1: 47499888 ~ 47513484 (+)
ENSDARG00000035080	hsf2bp	1: 29102011 ~ 29139183 (-)
ENSDARG00000087536	znf407	16: 6727195 ~ 6747274 (+)
ENSDARG00000043334	ccdc6a	17: 20673963 ~ 20695998 (-)
ENSDARG00000054302	ehd4	17: 29195962 ~ 29213710 (-)
ENSDARG00000092889	zgc:194246	14: 34512011 ~ 34513103 (-)
ENSDARG00000075203	zgc:195212	14: 44790904 ~ 44803605 (+)
ENSDARG00000058587	terb1	18: 7456597 ~ 7478152 (+)
ENSDARG00000005468	irf2bp1	18: 46361544 ~ 46369516 (-)
ENSDARG00000077178	zgc:152977	12: 10478666 ~ 10512911 (-)
ENSDARG00000017595	ccdc6b	12: 7609928 ~ 7639149 (-)
ENSDARG00000070119	ctc1	23: 44970214 ~ 45022681 (-)
ENSDARG00000100481	smg6	10: 35584647 ~ 35613752 (-)
ENSDARG00000037415	dlgap1b	24: 9162512 ~ 9268048 (+)
ENSDARG00000058710	terf1	24: 13336327 ~ 13349802 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 14)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000058587

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences